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See other NKD2 CNV Assays ›
Gene Symbol
NKD2
Assay Reference Genome
Location

Chr.5:1021692 on build GRCh38
Cytoband
5p15.33
Assay ID Hs03574204_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 85409

Gene Name:

 naked cuticle homolog 2

Gene Aliases:

 Naked2

Location:

 Chr.5:1008845-1038812 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
NKD2 NM_001271082.1 NP_001258011.1
NM_033120.3 NP_149111.1
XM_005248382.3 XP_005248439.1
XM_005248383.3 XP_005248440.1
XM_011514150.2 XP_011512452.1
AB062887.1 BAB70501.1
AF358137.1 AAK57486.1
BC012176.1 AAH12176.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv27512 Chr.5:1001602 - 1049278 on Build GRCh38 Gain+Loss NKD2
esv3894109 Chr.5:988113 - 1228100 on Build GRCh38 Gain SLC6A19 SLC6A18 LOC100506688 MIR4635 SLC12A7 CTD-3080P12.3 NKD2
esv1007931 Chr.5:1017277 - 1025681 on Build GRCh38 Deletion NKD2
esv2759316 Chr.5:620048 - 1161361 on Build GRCh38 Gain+Loss LOC101929895 ZDHHC11B TPPP CEP72 LOC100506688 BRD9 TRIP13 MIR4635 SLC12A7 ZDHHC11 NKD2
dgv9522n54 Chr.5:1009968 - 1190946 on Build GRCh38 Loss MIR4635 SLC12A7 CTD-3080P12.3 NKD2
nsv596629 Chr.5:457146 - 1468172 on Build GRCh38 Gain LOC100288152 CLPTM1L MIR4457 LOC100506688 TERT MIR4635 EXOC3 SLC9A3 ZDHHC11B SLC6A19 TPPP CEP72 SLC6A18 PP7080 CTD-3080P12.3 SLC6A3 LINC01511 LOC101929895 LPCAT1 TRIP13 MIR4456 SLC12A7 NKD2 LOC100996325 BRD9 ZDHHC11
nsv822953 Chr.5:1003717 - 1113523 on Build GRCh38 Gain MIR4635 SLC12A7 NKD2
nsv527182 Chr.5:995155 - 1207412 on Build GRCh38 Loss SLC6A19 LOC100506688 MIR4635 SLC12A7 CTD-3080P12.3 NKD2
esv3603788 Chr.5:951987 - 1049107 on Build GRCh38 Loss LOC100506688 NKD2
nsv469577 Chr.5:971392 - 1195577 on Build GRCh38 Loss LOC100506688 MIR4635 SLC12A7 CTD-3080P12.3 NKD2
esv2669088 Chr.5:1000913 - 1049209 on Build GRCh38 Deletion NKD2
esv3603792 Chr.5:1000756 - 1054628 on Build GRCh38 Gain SLC12A7 NKD2
nsv470985 Chr.5:992394 - 1056998 on Build GRCh38 Gain LOC100506688 SLC12A7 NKD2
nsv950627 Chr.5:1008886 - 1300685 on Build GRCh38 Deletion SLC6A19 SLC6A18 TERT MIR4635 SLC12A7 CTD-3080P12.3 NKD2
esv999700 Chr.5:1021704 - 1026590 on Build GRCh38 Gain NKD2
nsv10654 Chr.5:676170 - 1082573 on Build GRCh38 Gain+Loss ZDHHC11B TPPP LOC100506688 BRD9 TRIP13 MIR4635 SLC12A7 ZDHHC11 NKD2

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More Information


Additional Information:

For this assay, SNP(s) [rs116034498] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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