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See other TCF19 CNV Assays ›
Gene Symbol
TCF19
Assay Reference Genome
Location

Chr.6:31161218 on build GRCh38
Cytoband
6p21.33
Assay ID Hs03581178_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 6941

Gene Name:

 transcription factor 19

Gene Aliases:

 SC1, TCF-19

Location:

 Chr.6:31158524-31164215 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TCF19 NM_001077511.1 NP_001070979.1
NM_001318908.1 NP_001305837.1
NM_007109.2 NP_009040.2
AK315258.1
BC002493.2 AAH02493.1
BC033086.1 AAH33086.1
BC044632.1 AAH44632.1
BT007247.1 AAP35911.1
BX647174.1
S53374.1 AAB19475.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv525933 Chr.6:31113428 - 31174468 on Build GRCh38 Loss TCF19 PSORS1C3 PSORS1C2 CCHCR1 CDSN POU5F1 PSORS1C1
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion MIR4640 HLA-J RNF39 HLA-E IER3 ZNRD1 OR2H1 CDSN HLA-B PSORS1C1 OR2H2 HCG4 LINC01015 HLA-F-AS1 CCHCR1 ATAT1 TRIM39 DPCR1 HCG17 LOC101929006 OR12D2 TRIM15 OR5V1 C6orf15 LOC105375014 HCG18 MDC1 HLA-A MIR6891 NRM LOC554223 OR2J2 GABBR1 HLA-C MDC1-AS1 UBD MIR877 TRIM40 OR14J1 PPP1R18 HLA-G MAS1L PSORS1C3 PSORS1C2 MUC21 TRIM39-RPP21 OR10C1 PPP1R10 TRIM31-AS1 LINC00243 ZFP57 OR11A1 GNL1 HCG20 OR12D3 MICA HLA-H GTF2H4 TUBB MUC22 HLA-K FLOT1 TRIM26 RPP21 HLA-F PRR3 IFITM4P TRIM31 ABCF1 VARS2 DHX16 TCF19 HCG9 C6orf136 ZNRD1ASP HCG27 TRIM10 POU5F1 PPP1R11 HCG22 SNORD32B HCG8 MRPS18B SFTA2 MOG HCG4B HLA-L DDR1
nsv524061 Chr.6:31139310 - 31166166 on Build GRCh38 Loss TCF19 PSORS1C2 CCHCR1 POU5F1 PSORS1C1
esv2759414 Chr.6:31060513 - 31574531 on Build GRCh38 Gain+Loss HCP5 ATP6V1G2-DDX39B PSORS1C3 DDX39B-AS1 PSORS1C2 CDSN MICB HLA-B PSORS1C1 SNORD84 MICA SNORD117 LTA CCHCR1 LOC102725068 HCG26 TCF19 NFKBIL1 ATP6V1G2 HCG27 LOC100287329 POU5F1 MCCD1 C6orf15 DDX39B MIR6891 HLA-C
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss PPP1R18 MIR4640 PSORS1C3 PSORS1C2 MUC21 HLA-E IER3 PPP1R10 CDSN PSORS1C1 LINC00243 GNL1 HCG20 GTF2H4 TUBB MUC22 CCHCR1 FLOT1 PRR3 ABCF1 VARS2 DHX16 TCF19 C6orf136 ATAT1 HCG27 DPCR1 POU5F1 HCG22 C6orf15 LOC105375014 MRPS18B MDC1 NRM SFTA2 HLA-C MDC1-AS1 MIR877 DDR1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion MIR4640 HLA-J RNF39 HLA-E IER3 ZNRD1 OR2H1 CDSN PSORS1C1 OR2J3 LINC01623 ZNF311 OR2H2 HCG4 LINC01015 HLA-F-AS1 CCHCR1 LOC100129636 ATAT1 TRIM39 DPCR1 HCG17 LOC101929006 OR12D2 TRIM15 OR5V1 C6orf15 LOC105375014 HCG18 MDC1 HLA-A NRM LOC554223 OR2J2 GABBR1 MDC1-AS1 UBD MIR877 TRIM40 OR14J1 PPP1R18 HLA-G MAS1L PSORS1C3 PSORS1C2 MUC21 TRIM39-RPP21 OR10C1 PPP1R10 TRIM31-AS1 LINC00243 ZFP57 OR11A1 GNL1 HCG20 OR12D3 OR2W1 TRIM27 HLA-H GTF2H4 TUBB MUC22 HLA-K FLOT1 TRIM26 RPP21 HLA-F OR2B3 PRR3 IFITM4P TRIM31 ABCF1 VARS2 DHX16 TCF19 HCG9 C6orf136 ZNRD1ASP HCG27 TRIM10 POU5F1 PPP1R11 HCG16 HCG22 SNORD32B HCG8 LINC00533 MRPS18B HCG14 SFTA2 MOG HCG4B HLA-L LINC01556 DDR1
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion MIR4640 HLA-J RNF39 HLA-E IER3 ZNRD1 CDSN PSORS1C1 HCG4 HLA-F-AS1 CCHCR1 ATAT1 TRIM39 DPCR1 HCG17 TRIM15 C6orf15 LOC105375014 HCG18 MDC1 HLA-A NRM LOC554223 HLA-C MDC1-AS1 MIR877 TRIM40 PPP1R18 HLA-G PSORS1C3 PSORS1C2 MUC21 TRIM39-RPP21 PPP1R10 TRIM31-AS1 LINC00243 GNL1 HCG20 HLA-H GTF2H4 TUBB MUC22 HLA-K FLOT1 TRIM26 RPP21 HLA-F PRR3 IFITM4P TRIM31 ABCF1 VARS2 DHX16 TCF19 HCG9 C6orf136 ZNRD1ASP HCG27 TRIM10 POU5F1 PPP1R11 HCG22 HCG8 MRPS18B SFTA2 HCG4B HLA-L DDR1
dgv1174e214 Chr.6:31139843 - 31176217 on Build GRCh38 Gain TCF19 PSORS1C3 CCHCR1 POU5F1 PSORS1C1
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion PPP1R18 MIR4640 PSORS1C3 PSORS1C2 MUC21 HLA-E IER3 PPP1R10 CDSN PSORS1C1 LINC00243 GNL1 HCG20 GTF2H4 TUBB MUC22 CCHCR1 FLOT1 PRR3 ABCF1 VARS2 DHX16 TCF19 C6orf136 ATAT1 HCG27 DPCR1 POU5F1 HCG22 C6orf15 LOC105375014 MRPS18B MDC1 NRM SFTA2 HLA-C MDC1-AS1 MIR877 DDR1
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss MIR4640 HLA-J RNF39 HLA-E IER3 ZNRD1 CDSN PSORS1C1 CCHCR1 ATAT1 TRIM39 DPCR1 HCG17 TRIM15 C6orf15 LOC105375014 HCG18 MDC1 HLA-A NRM HLA-C MDC1-AS1 MIR877 TRIM40 PPP1R18 PSORS1C3 PSORS1C2 MUC21 TRIM39-RPP21 PPP1R10 TRIM31-AS1 LINC00243 GNL1 HCG20 HLA-H GTF2H4 TUBB MUC22 HLA-K FLOT1 TRIM26 RPP21 PRR3 TRIM31 ABCF1 VARS2 DHX16 TCF19 HCG9 C6orf136 ZNRD1ASP HCG27 TRIM10 POU5F1 PPP1R11 HCG22 HCG8 MRPS18B SFTA2 HCG4B HLA-L DDR1
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication HCP5 MIR4640 HLA-J RNF39 HLA-E IER3 ZNRD1 CDSN HLA-B PSORS1C1 CCHCR1 HCG26 ATAT1 TRIM39 DPCR1 HCG17 TRIM15 C6orf15 LOC105375014 HCG18 MDC1 MIR6891 NRM HLA-C MDC1-AS1 MIR877 TRIM40 PPP1R18 PSORS1C3 PSORS1C2 MUC21 TRIM39-RPP21 PPP1R10 TRIM31-AS1 LINC00243 GNL1 HCG20 MICA GTF2H4 TUBB MUC22 FLOT1 TRIM26 LOC102725068 RPP21 PRR3 TRIM31 ABCF1 VARS2 DHX16 TCF19 C6orf136 ZNRD1ASP HCG27 TRIM10 POU5F1 PPP1R11 HCG22 HCG8 MRPS18B SFTA2 HLA-L DDR1

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