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See other AGER CNV Assays ›
Gene Symbol
AGER
Assay Reference Genome
Location

Chr.6:32184048 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03584159_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 177

Gene Name:

 advanced glycosylation end product-specific receptor

Gene Aliases:

 RAGE, SCARJ1

Location:

 Chr.6:32180968-32185247 on Build GRCh38

Assay Gene Location:

 Within Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGER NM_001136.4 NP_001127.1
NM_001206929.1 NP_001193858.1
NM_001206932.1 NP_001193861.1
NM_001206934.1 NP_001193863.1
NM_001206936.1 NP_001193865.1
NM_001206940.1 NP_001193869.1
NM_001206954.1 NP_001193883.1
NM_001206966.1 NP_001193895.1
NM_172197.2 NP_751947.1
NR_038190.1 1 275
XM_017010328.1 XP_016865817.1
AB036432.1 BAA89369.1
AB061668.1 BAC65465.1
AB061669.1 1 199 BAC65466.1
AJ133822.1 CAB43108.1
AK298100.1
AK313178.1
AY755619.1 AAX07272.1
AY755620.1 AAX07273.1
AY755621.1 AAX07274.1
AY755622.1 AAX07275.1
AY755623.1 AAX07276.1
AY755624.1 AAX07277.1
AY755625.1 AAX07278.1
AY755626.1 AAX07279.1
AY755627.1 AAX07280.1
AY755628.1 AAX07281.1
BC020669.1 AAH20669.1
DQ104251.1
DQ104252.1
DQ104253.1
DQ104254.1 1 185
EU117141.1
EU428811.1
EU428812.1 1 175
EU428813.1 1 175
EU428814.1
EU428815.1 1 175
EU428816.1 1 175
EU826616.1
EU826617.1
EU826618.1
EU826619.1
EU826620.1
FJ545655.1
GU139370.1 1 197
GU139371.1 1 197
GU139372.1 1 197
GU139373.1 1 197
GU139374.1 1 197
GU139375.1 1 197
GU139376.1 1 197
GU139377.1 1 197
GU139378.1
GU139379.1 1 197
GU139380.1 1 197
GU139381.1
GU139382.1
GU139383.1
GU139384.1
HQ148133.1
HQ148134.1
HQ148135.1 1 196
KC692917.1
M91211.1 AAA03574.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss MIR6721 LOC100507547 PBX2 PPT2 FKBPL TNXB ATF6B MIR6833 AGER GPSM3 PPT2-EGFL8 EGFL8 PRRT1 NOTCH4 AGPAT1 RNF5
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss BTNL2 HLA-DRB6 HLA-DRB5 LOC100507547 HLA-DRB1 HLA-DQB1-AS1 HLA-DQB2 HLA-DQB1 LOC101929163 PPT2 TNXB EGFL8 PRRT1 NOTCH4 AGPAT1 MIR6721 MIR3135B CYP21A1P TNXA HLA-DQA1 CYP21A2 HLA-DQA2 PBX2 HLA-DRA FKBPL ATF6B C4A MIR6833 C6orf10 AGER C4B GPSM3 HCG23 PPT2-EGFL8 RNF5
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss BTNL2 C2-AS1 LOC100507547 MIR1236 HLA-DRB1 C2 HLA-DQB1-AS1 TNXB SLC44A4 NEU1 C6orf48 EGFL8 PRRT1 NOTCH4 HSPA1B AGPAT1 HLA-DQA1 CYP21A2 PBX2 FKBPL ATF6B C4A MIR6833 C4B SNORD48 PPT2-EGFL8 EHMT2 HLA-DRB6 HLA-DRB5 HSPA1A HLA-DQB1 LOC101929163 PPT2 SKIV2L STK19 CFB MIR6721 CYP21A1P NELFE TNXA HLA-DRA SNORD52 C6orf10 AGER ZBTB12 GPSM3 HCG23 DXO RNF5
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss C2-AS1 LOC100507547 MIR1236 C2 PPT2 TNXB SKIV2L STK19 EGFL8 PRRT1 NOTCH4 CFB AGPAT1 MIR6721 CYP21A1P NELFE TNXA CYP21A2 PBX2 FKBPL ATF6B C4A MIR6833 AGER C4B GPSM3 PPT2-EGFL8 DXO RNF5
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion SAPCD1-AS1 BTNL2 CSNK2B MIR6832 C2-AS1 LOC100507547 MIR1236 LOC100287329 LST1 PRRC2A HLA-DRB1 HSPA1L C2 TNXB SLC44A4 NEU1 SAPCD1 LTA C6orf48 LOC102725068 BAG6 EGFL8 PRRT1 NOTCH4 HSPA1B C6orf25 LY6G6D AGPAT1 AIF1 MSH5-SAPCD1 CYP21A2 LY6G5B PBX2 LTB VWA7 FKBPL ATF6B C4A MIR6833 DDX39B-AS1 C4B ABHD16A SNORD48 LY6G6E APOM SNORA38 PPT2-EGFL8 EHMT2 HLA-DRB6 HLA-DRB5 HCP5 ATP6V1G2 MIR4646 HSPA1A LOC101929163 PPT2 HCG26 DDAH2 LY6G5C SKIV2L TNF DDX39B STK19 C6orf47 VARS CFB MIR6721 CYP21A1P MCCD1 NELFE TNXA HLA-DRA ATP6V1G2-DDX39B LY6G6C LSM2 NFKBIL1 MICB SNORD52 GPANK1 C6orf10 AGER ZBTB12 GPSM3 MSH5 HCG23 DXO SNORD117 RNF5 CLIC1 SNORD84 LY6G6F NCR3
nsv602105 Chr.6:32183666 - 32210123 on Build GRCh38 Loss GPSM3 PBX2 NOTCH4 AGER
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SAPCD1-AS1 CSNK2B MIR6832 C2-AS1 LST1 HLA-DRB1 C2 SLC44A4 VPS52 SAPCD1 LTA MIR5004 LOC102725068 ZBTB22 BAG6 EGFL8 PRRT1 NOTCH4 PHF1 LY6G6D MSH5-SAPCD1 HLA-DQA1 LY6G5B VWA7 KIFC1 HLA-DMA HCG25 BRD2 C4A MIR6833 DDX39B-AS1 PPP1R2P1 C4B SNORD48 RING1 PPT2-EGFL8 CUTA HLA-DRB6 HLA-DRB5 HLA-DPB2 HCP5 MIR4646 PPT2 HCG26 HCG24 LY6G5C TNF DDX39B STK19 SLC39A7 VARS HLA-DPA1 LOC100294145 MIR3135B MCCD1 NELFE HLA-DOB RXRB HLA-DRA LY6G6C NFKBIL1 SNORD52 GPANK1 C6orf10 MIR219A1 GPSM3 MSH5 HLA-DMB HCG23 TAP1 DXO SNORD117 RNF5 LY6G6F BTNL2 LOC100507547 MIR1236 LOC100287329 PRRC2A HSPA1L HLA-DQB1-AS1 MIR6834 DAXX TNXB WDR46 NEU1 C6orf48 RGL2 HSPA1B C6orf25 AGPAT1 AIF1 CYP21A2 HLA-DQA2 PBX2 LTB FKBPL TAP2 ATF6B ABHD16A LY6G6E APOM SNORA38 PSMB9 EHMT2 MIR6873 HLA-DQB2 ATP6V1G2 TAPBP HSPA1A HLA-DQB1 LOC101929163 DDAH2 SYNGAP1 SKIV2L PSMB8-AS1 HLA-DOA B3GALT4 C6orf47 HLA-DPB1 CFB MIR6721 CYP21A1P TNXA RPS18 ATP6V1G2-DDX39B PFDN6 LSM2 MICB AGER PSMB8 ZBTB12 ZBTB9 COL11A2 HSD17B8 CLIC1 SNORD84 NCR3
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss MIR6721 LOC100507547 PBX2 PPT2 FKBPL TNXB ATF6B MIR6833 AGER GPSM3 PPT2-EGFL8 EGFL8 PRRT1 NOTCH4 AGPAT1 RNF5
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SAPCD1-AS1 CSNK2B MIR6832 C2-AS1 LST1 HLA-DRB1 C2 SLC44A4 VPS52 SAPCD1 LTA MIR5004 LOC102725068 ZBTB22 BAG6 EGFL8 PRRT1 NOTCH4 PHF1 LY6G6D MSH5-SAPCD1 HLA-DQA1 LY6G5B VWA7 KIFC1 HLA-DMA HCG25 BRD2 C4A MIR6833 DDX39B-AS1 PPP1R2P1 C4B SNORD48 RING1 PPT2-EGFL8 CUTA HLA-DRB6 HLA-DRB5 HLA-DPB2 HCP5 MIR4646 PPT2 HCG26 HCG24 LY6G5C TNF DDX39B STK19 SLC39A7 VARS HLA-DPA1 LOC100294145 MIR3135B MCCD1 NELFE HLA-DOB RXRB HLA-DRA LY6G6C NFKBIL1 SNORD52 GPANK1 C6orf10 MIR219A1 GPSM3 MSH5 HLA-DMB HCG23 TAP1 DXO SNORD117 RNF5 LY6G6F BTNL2 LOC100507547 MIR1236 LOC100287329 PRRC2A HSPA1L HLA-DQB1-AS1 MIR6834 DAXX TNXB WDR46 NEU1 C6orf48 RGL2 HSPA1B C6orf25 AGPAT1 AIF1 CYP21A2 HLA-DQA2 PBX2 LTB FKBPL TAP2 ATF6B ABHD16A LY6G6E APOM SNORA38 PSMB9 EHMT2 MIR6873 HLA-DQB2 ATP6V1G2 TAPBP HSPA1A HLA-DQB1 LOC101929163 DDAH2 SYNGAP1 SKIV2L PSMB8-AS1 HLA-DOA B3GALT4 C6orf47 HLA-DPB1 CFB MIR6721 CYP21A1P TNXA RPS18 ATP6V1G2-DDX39B PFDN6 LSM2 MICB AGER PSMB8 ZBTB12 ZBTB9 COL11A2 HSD17B8 CLIC1 SNORD84 NCR3
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss SAPCD1-AS1 BTNL2 CSNK2B MIR6832 C2-AS1 LOC100507547 MIR1236 LOC100287329 LST1 PRRC2A HSPA1L C2 TNXB SLC44A4 NEU1 SAPCD1 LTA C6orf48 LOC102725068 BAG6 EGFL8 PRRT1 NOTCH4 HSPA1B C6orf25 LY6G6D AGPAT1 AIF1 MSH5-SAPCD1 CYP21A2 LY6G5B PBX2 LTB VWA7 FKBPL ATF6B C4A MIR6833 DDX39B-AS1 C4B ABHD16A SNORD48 LY6G6E APOM SNORA38 PPT2-EGFL8 HLA-B EHMT2 HCP5 ATP6V1G2 MIR4646 MICA HSPA1A LOC101929163 PPT2 HCG26 DDAH2 LY6G5C SKIV2L TNF DDX39B STK19 MIR6891 C6orf47 VARS CFB MIR6721 CYP21A1P MCCD1 NELFE TNXA HLA-DRA ATP6V1G2-DDX39B LY6G6C LSM2 NFKBIL1 MICB SNORD52 GPANK1 C6orf10 AGER ZBTB12 GPSM3 MSH5 HCG23 DXO SNORD117 RNF5 CLIC1 SNORD84 LY6G6F NCR3

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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