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See other PRRT1 CNV Assays ›
Gene Symbol
PRRT1
Assay Reference Genome
Location

Chr.6:32150919 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03588331_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 80863

Gene Name:

 proline rich transmembrane protein 1

Gene Aliases:

 C6orf31, DSPD1, IFITMD7, NG5

Location:

 Chr.6:32148363-32151943 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 1 - Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PRRT1 NM_030651.3 NP_085154.3
AK054885.1 BAB70821.1
AK123424.1 1 1005
BC013201.1 AAH13201.1
BC063046.1 AAH63046.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss TNXB LOC100507547 PPT2 PPT2-EGFL8 PBX2 FKBPL NOTCH4 GPSM3 AGPAT1 RNF5 MIR6721 EGFL8 MIR6833 AGER PRRT1 ATF6B
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss HLA-DQB1 HLA-DQA1 HLA-DRB6 HLA-DQB2 PBX2 FKBPL AGPAT1 RNF5 MIR6721 MIR3135B EGFL8 MIR6833 HCG23 HLA-DRA CYP21A2 C6orf10 CYP21A1P AGER LOC101929163 TNXB HLA-DQA2 C4A LOC100507547 PPT2 PPT2-EGFL8 NOTCH4 BTNL2 GPSM3 HLA-DRB5 HLA-DRB1 HLA-DQB1-AS1 C4B PRRT1 ATF6B TNXA
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss SLC44A4 HLA-DQA1 NEU1 FKBPL RNF5 MIR6721 EGFL8 C2-AS1 HCG23 CYP21A2 C6orf10 AGER SNORD48 NELFE NOTCH4 BTNL2 GPSM3 HSPA1B C4B HLA-DQB1 HLA-DRB6 PBX2 STK19 EHMT2 AGPAT1 HSPA1A MIR6833 HLA-DRA CYP21A1P SKIV2L MIR1236 LOC101929163 C6orf48 TNXB C4A LOC100507547 SNORD52 PPT2 PPT2-EGFL8 HLA-DRB5 ZBTB12 HLA-DRB1 HLA-DQB1-AS1 CFB C2 DXO PRRT1 ATF6B TNXA
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss PBX2 FKBPL STK19 AGPAT1 RNF5 MIR6721 EGFL8 MIR6833 C2-AS1 CYP21A2 CYP21A1P AGER SKIV2L MIR1236 NELFE TNXB C4A LOC100507547 PPT2 PPT2-EGFL8 NOTCH4 GPSM3 CFB C2 C4B DXO PRRT1 ATF6B TNXA
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion SLC44A4 C6orf47 SAPCD1-AS1 NEU1 FKBPL LY6G5B RNF5 MIR6721 LTA LOC102725068 EGFL8 C2-AS1 HCG23 CYP21A2 C6orf10 CLIC1 AGER LY6G5C BAG6 SNORD48 NELFE ATP6V1G2-DDX39B LY6G6F LST1 MSH5 MICB NOTCH4 BTNL2 GPSM3 CSNK2B MCCD1 HSPA1B C4B LY6G6C VARS SNORA38 GPANK1 HLA-DRB6 HCP5 LY6G6E LOC100287329 NFKBIL1 PBX2 DDX39B SAPCD1 STK19 SNORD117 APOM TNF ATP6V1G2 EHMT2 AGPAT1 MIR4646 HSPA1A LTB HCG26 MIR6832 MIR6833 ABHD16A HLA-DRA AIF1 CYP21A1P SKIV2L MIR1236 SNORD84 NCR3 MSH5-SAPCD1 LOC101929163 C6orf48 DDAH2 TNXB C6orf25 C4A LOC100507547 LSM2 SNORD52 PPT2 PPT2-EGFL8 HLA-DRB5 ZBTB12 LY6G6D HLA-DRB1 CFB DDX39B-AS1 PRRC2A C2 HSPA1L DXO PRRT1 VWA7 ATF6B TNXA
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SYNGAP1 ZBTB9 SLC44A4 BRD2 HSD17B8 HLA-DQA1 PPP1R2P1 PHF1 HLA-DQB2 SAPCD1-AS1 NEU1 FKBPL RNF5 MIR3135B EGFL8 PSMB8 C6orf10 AGER LY6G5C PFDN6 LY6G6F HLA-DQA2 LST1 MSH5 HLA-DPA1 RGL2 HLA-DOA CSNK2B VARS HCG25 GPANK1 HLA-DRB6 TAP2 SNORD117 APOM ATP6V1G2 AGPAT1 MIR4646 HSPA1A LTB MIR6832 AIF1 CYP21A1P SKIV2L SNORD84 HLA-DPB1 MSH5-SAPCD1 PSMB9 LOC101929163 TNXB C6orf25 C4A HLA-DOB SNORD52 PPT2-EGFL8 PSMB8-AS1 HLA-DRB5 DAXX LY6G6D HLA-DRB1 HLA-DQB1-AS1 CFB HLA-DPB2 C2 DXO PRRT1 VWA7 MIR219A1 KIFC1 C6orf47 RING1 LY6G5B MIR6721 LTA LOC102725068 VPS52 C2-AS1 HCG23 CYP21A2 CLIC1 BAG6 TAPBP SNORD48 ZBTB22 NELFE ATP6V1G2-DDX39B MICB NOTCH4 BTNL2 GPSM3 LOC100294145 B3GALT4 COL11A2 MCCD1 HSPA1B MIR5004 HCG24 C4B LY6G6C HLA-DQB1 SNORA38 HLA-DMB HCP5 LY6G6E LOC100287329 NFKBIL1 PBX2 DDX39B SAPCD1 STK19 TNF EHMT2 HCG26 MIR6833 ABHD16A HLA-DRA TAP1 MIR6834 SLC39A7 MIR1236 NCR3 MIR6873 C6orf48 DDAH2 HLA-DMA RXRB LOC100507547 LSM2 PPT2 ZBTB12 WDR46 DDX39B-AS1 PRRC2A CUTA HSPA1L RPS18 ATF6B TNXA
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss TNXB LOC100507547 PPT2 PPT2-EGFL8 PBX2 FKBPL NOTCH4 GPSM3 AGPAT1 RNF5 MIR6721 EGFL8 MIR6833 AGER PRRT1 ATF6B
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SYNGAP1 ZBTB9 SLC44A4 BRD2 HSD17B8 HLA-DQA1 PPP1R2P1 PHF1 HLA-DQB2 SAPCD1-AS1 NEU1 FKBPL RNF5 MIR3135B EGFL8 PSMB8 C6orf10 AGER LY6G5C PFDN6 LY6G6F HLA-DQA2 LST1 MSH5 HLA-DPA1 RGL2 HLA-DOA CSNK2B VARS HCG25 GPANK1 HLA-DRB6 TAP2 SNORD117 APOM ATP6V1G2 AGPAT1 MIR4646 HSPA1A LTB MIR6832 AIF1 CYP21A1P SKIV2L SNORD84 HLA-DPB1 MSH5-SAPCD1 PSMB9 LOC101929163 TNXB C6orf25 C4A HLA-DOB SNORD52 PPT2-EGFL8 PSMB8-AS1 HLA-DRB5 DAXX LY6G6D HLA-DRB1 HLA-DQB1-AS1 CFB HLA-DPB2 C2 DXO PRRT1 VWA7 MIR219A1 KIFC1 C6orf47 RING1 LY6G5B MIR6721 LTA LOC102725068 VPS52 C2-AS1 HCG23 CYP21A2 CLIC1 BAG6 TAPBP SNORD48 ZBTB22 NELFE ATP6V1G2-DDX39B MICB NOTCH4 BTNL2 GPSM3 LOC100294145 B3GALT4 COL11A2 MCCD1 HSPA1B MIR5004 HCG24 C4B LY6G6C HLA-DQB1 SNORA38 HLA-DMB HCP5 LY6G6E LOC100287329 NFKBIL1 PBX2 DDX39B SAPCD1 STK19 TNF EHMT2 HCG26 MIR6833 ABHD16A HLA-DRA TAP1 MIR6834 SLC39A7 MIR1236 NCR3 MIR6873 C6orf48 DDAH2 HLA-DMA RXRB LOC100507547 LSM2 PPT2 ZBTB12 WDR46 DDX39B-AS1 PRRC2A CUTA HSPA1L RPS18 ATF6B TNXA
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss SLC44A4 C6orf47 SAPCD1-AS1 NEU1 FKBPL LY6G5B RNF5 MIR6721 LTA LOC102725068 EGFL8 C2-AS1 HCG23 CYP21A2 C6orf10 CLIC1 AGER LY6G5C BAG6 SNORD48 NELFE ATP6V1G2-DDX39B LY6G6F LST1 MSH5 MICB NOTCH4 BTNL2 GPSM3 CSNK2B MCCD1 HSPA1B C4B LY6G6C MICA VARS SNORA38 GPANK1 HCP5 LY6G6E LOC100287329 NFKBIL1 PBX2 DDX39B SAPCD1 STK19 SNORD117 APOM TNF ATP6V1G2 EHMT2 AGPAT1 MIR4646 HSPA1A LTB HCG26 MIR6832 MIR6833 ABHD16A HLA-DRA AIF1 CYP21A1P SKIV2L MIR1236 SNORD84 NCR3 MSH5-SAPCD1 LOC101929163 C6orf48 DDAH2 TNXB C6orf25 C4A LOC100507547 LSM2 SNORD52 PPT2 PPT2-EGFL8 HLA-B ZBTB12 LY6G6D CFB MIR6891 DDX39B-AS1 PRRC2A C2 HSPA1L DXO PRRT1 VWA7 ATF6B TNXA

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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