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See other AGER CNV Assays ›
Gene Symbol
AGER
Assay Reference Genome
Location

Chr.6:32184564 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03596766_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 177

Gene Name:

 advanced glycosylation end product-specific receptor

Gene Aliases:

 RAGE, SCARJ1

Location:

 Chr.6:32180968-32185247 on Build GRCh38

Assay Gene Location:

 Within Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGER XM_017010328.1 1 684 XP_016865817.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss TNXB GPSM3 AGER LOC100507547 RNF5 AGPAT1 PPT2-EGFL8 ATF6B NOTCH4 EGFL8 MIR6833 MIR6721 PBX2 FKBPL PRRT1 PPT2
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss TNXB BTNL2 MIR3135B HLA-DQB1 CYP21A1P HCG23 ATF6B HLA-DRB5 MIR6833 MIR6721 C4A FKBPL PRRT1 TNXA CYP21A2 HLA-DRB6 HLA-DRB1 GPSM3 C6orf10 AGER LOC100507547 RNF5 HLA-DQB1-AS1 AGPAT1 PPT2-EGFL8 HLA-DRA NOTCH4 EGFL8 PBX2 HLA-DQA2 LOC101929163 HLA-DQB2 C4B HLA-DQA1 PPT2
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss BTNL2 HLA-DQB1 CYP21A1P HCG23 STK19 DXO C4A MIR1236 C6orf48 CYP21A2 HLA-DRB6 GPSM3 SNORD48 RNF5 NELFE HLA-DRA C2-AS1 SKIV2L EHMT2 HLA-DQA1 PPT2 TNXB CFB ATF6B HSPA1B HLA-DRB5 MIR6833 MIR6721 FKBPL NEU1 PRRT1 TNXA HLA-DRB1 C6orf10 AGER LOC100507547 HLA-DQB1-AS1 AGPAT1 PPT2-EGFL8 NOTCH4 HSPA1A EGFL8 PBX2 LOC101929163 SLC44A4 C4B ZBTB12 C2 SNORD52
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss TNXB CFB CYP21A1P STK19 ATF6B MIR6833 MIR6721 DXO C4A MIR1236 FKBPL PRRT1 TNXA CYP21A2 GPSM3 AGER LOC100507547 RNF5 AGPAT1 PPT2-EGFL8 NELFE NOTCH4 C2-AS1 EGFL8 SKIV2L PBX2 C4B PPT2 C2
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion BAG6 BTNL2 MCCD1 LTA CYP21A1P HCG23 LY6G5B NCR3 CLIC1 STK19 DXO C4A MIR1236 HCG26 APOM C6orf48 CSNK2B PRRC2A CYP21A2 C6orf47 HLA-DRB6 SNORD84 GPSM3 SNORD48 LST1 VARS RNF5 NELFE HLA-DRA C2-AS1 LSM2 SKIV2L SNORD117 TNF LY6G5C AIF1 EHMT2 LOC102725068 C6orf25 PPT2 TNXB GPANK1 DDAH2 HSPA1L CFB SNORA38 SAPCD1 ATF6B MSH5-SAPCD1 HSPA1B HLA-DRB5 MIR6832 MIR6833 LY6G6D MIR6721 FKBPL MSH5 NEU1 PRRT1 DDX39B SAPCD1-AS1 VWA7 MIR4646 HCP5 TNXA HLA-DRB1 LY6G6E C6orf10 AGER ATP6V1G2-DDX39B LOC100287329 NFKBIL1 LOC100507547 AGPAT1 PPT2-EGFL8 ATP6V1G2 LY6G6C LTB NOTCH4 HSPA1A EGFL8 DDX39B-AS1 PBX2 LOC101929163 SLC44A4 C4B LY6G6F ABHD16A MICB ZBTB12 C2 SNORD52
nsv602105 Chr.6:32183666 - 32210123 on Build GRCh38 Loss PBX2 GPSM3 AGER NOTCH4
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion CUTA SYNGAP1 BTNL2 MCCD1 CYP21A1P NCR3 CLIC1 DXO C4A HCG26 APOM CYP21A2 C6orf47 SNORD84 GPSM3 LST1 RNF5 HLA-DPB2 RING1 NELFE HLA-DOA HLA-DRA SNORD117 PSMB9 TNF LY6G5C AIF1 EHMT2 C6orf25 HLA-DQA1 PPT2 HSPA1L CFB SNORA38 MIR3135B PSMB8 MSH5-SAPCD1 HLA-DRB5 MIR6833 MIR219A1 FKBPL NEU1 PRRT1 DDX39B SAPCD1-AS1 VWA7 MIR4646 C6orf10 ATP6V1G2-DDX39B PHF1 PPT2-EGFL8 LY6G6C EGFL8 DDX39B-AS1 LOC101929163 HLA-DQB2 LY6G6F ABHD16A MICB ZBTB12 HLA-DPA1 HSD17B8 SNORD52 BAG6 TAPBP RXRB LTA HLA-DQB1 HCG23 LY6G5B STK19 HLA-DOB RGL2 PSMB8-AS1 MIR1236 DAXX C6orf48 CSNK2B PRRC2A TAP1 COL11A2 HLA-DRB6 RPS18 HLA-DPB1 SNORD48 VARS KIFC1 ZBTB22 C2-AS1 LSM2 WDR46 SKIV2L HLA-DQA2 HLA-DMA LOC102725068 B3GALT4 ZBTB9 PPP1R2P1 TNXB LOC100294145 GPANK1 DDAH2 SAPCD1 BRD2 ATF6B HSPA1B MIR6832 LY6G6D MIR6721 MSH5 HCG25 VPS52 MIR6873 HCP5 TNXA HLA-DRB1 LY6G6E PFDN6 AGER LOC100287329 NFKBIL1 LOC100507547 HLA-DQB1-AS1 AGPAT1 TAP2 ATP6V1G2 HLA-DMB LTB NOTCH4 HSPA1A PBX2 SLC44A4 C4B SLC39A7 MIR5004 C2 MIR6834 HCG24
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss TNXB GPSM3 AGER LOC100507547 RNF5 AGPAT1 PPT2-EGFL8 ATF6B NOTCH4 EGFL8 MIR6833 MIR6721 PBX2 FKBPL PRRT1 PPT2
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion CUTA SYNGAP1 BTNL2 MCCD1 CYP21A1P NCR3 CLIC1 DXO C4A HCG26 APOM CYP21A2 C6orf47 SNORD84 GPSM3 LST1 RNF5 HLA-DPB2 RING1 NELFE HLA-DOA HLA-DRA SNORD117 PSMB9 TNF LY6G5C AIF1 EHMT2 C6orf25 HLA-DQA1 PPT2 HSPA1L CFB SNORA38 MIR3135B PSMB8 MSH5-SAPCD1 HLA-DRB5 MIR6833 MIR219A1 FKBPL NEU1 PRRT1 DDX39B SAPCD1-AS1 VWA7 MIR4646 C6orf10 ATP6V1G2-DDX39B PHF1 PPT2-EGFL8 LY6G6C EGFL8 DDX39B-AS1 LOC101929163 HLA-DQB2 LY6G6F ABHD16A MICB ZBTB12 HLA-DPA1 HSD17B8 SNORD52 BAG6 TAPBP RXRB LTA HLA-DQB1 HCG23 LY6G5B STK19 HLA-DOB RGL2 PSMB8-AS1 MIR1236 DAXX C6orf48 CSNK2B PRRC2A TAP1 COL11A2 HLA-DRB6 RPS18 HLA-DPB1 SNORD48 VARS KIFC1 ZBTB22 C2-AS1 LSM2 WDR46 SKIV2L HLA-DQA2 HLA-DMA LOC102725068 B3GALT4 ZBTB9 PPP1R2P1 TNXB LOC100294145 GPANK1 DDAH2 SAPCD1 BRD2 ATF6B HSPA1B MIR6832 LY6G6D MIR6721 MSH5 HCG25 VPS52 MIR6873 HCP5 TNXA HLA-DRB1 LY6G6E PFDN6 AGER LOC100287329 NFKBIL1 LOC100507547 HLA-DQB1-AS1 AGPAT1 TAP2 ATP6V1G2 HLA-DMB LTB NOTCH4 HSPA1A PBX2 SLC44A4 C4B SLC39A7 MIR5004 C2 MIR6834 HCG24
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss BAG6 BTNL2 MCCD1 LTA CYP21A1P HCG23 LY6G5B NCR3 CLIC1 STK19 HLA-B DXO C4A MIR1236 HCG26 APOM C6orf48 CSNK2B PRRC2A CYP21A2 C6orf47 SNORD84 GPSM3 SNORD48 LST1 VARS RNF5 NELFE HLA-DRA C2-AS1 LSM2 SKIV2L SNORD117 TNF LY6G5C AIF1 EHMT2 LOC102725068 C6orf25 PPT2 TNXB GPANK1 DDAH2 HSPA1L CFB SNORA38 SAPCD1 ATF6B MSH5-SAPCD1 HSPA1B MIR6832 MIR6833 LY6G6D MIR6721 FKBPL MSH5 MICA NEU1 PRRT1 DDX39B SAPCD1-AS1 VWA7 MIR4646 HCP5 TNXA LY6G6E C6orf10 AGER ATP6V1G2-DDX39B LOC100287329 NFKBIL1 LOC100507547 AGPAT1 PPT2-EGFL8 ATP6V1G2 LY6G6C LTB NOTCH4 HSPA1A EGFL8 DDX39B-AS1 PBX2 LOC101929163 MIR6891 SLC44A4 C4B LY6G6F ABHD16A MICB ZBTB12 C2 SNORD52

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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