Hs03637613_cn

• Gene Symbol: SSC4D
• Assay Reference Genome Location: Chr.7:76397327 on build GRCh38
• Cytoband: 7q11.23

Target Gene Details

• Entrez Gene ID: 136853
• Gene Name: scavenger receptor cysteine rich family member with 4 domains
• Gene Aliases: S4D-SRCRB, SRCRB-S4D, SRCRB4D
• Location: Chr.7:76389329-76410025 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SSC4D	NM_080744.1			NP_542782.1
	XM_017011750.1			XP_016867239.1
	AJ312755.1			CAC84764.1
	AK172783.1			BAD18764.1
	BC113840.1			AAI13841.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2422494	Chr.7:76286900 - 76984449 on Build GRCh38	Duplication	SPDYE16 ZP3 LOC105375355 FDPSP2 SRRM3 POMZP3 DTX2P1-UPK3BP1-PMS2P11 LOC100133091 YWHAG HSPB1 SSC4D DTX2
nsv428174	Chr.7:76305019 - 77220062 on Build GRCh38	Gain	DTX2P1-UPK3BP1-PMS2P11 YWHAG SPDYE16 SPDYE18 PMS2P9 ZP3 LOC105375355 FDPSP2 POMZP3 LOC100133091 CCDC146 FGL2 SPDYE17 SSC4D DTX2
nsv528969	Chr.7:75074053 - 76920728 on Build GRCh38	Gain	NSUN5P1 YWHAG RHBDD2 SNORA14A NCF1C PMS2P10 TRIM73 POMZP3 LOC100133091 SPDYE5 HIP1 POR MIR4651 SSC4D STYXL1 GTF2IP7 LOC541473 CCL24 GTF2IRD2B HSPB1 GTF2IP1 TMEM120A POM121C PMS2P3 SPDYE16 PMS2P2 ZP3 LOC105375355 FDPSP2 SRRM3 MDH2 LOC441259 STAG3L1 CCL26 LOC107986711 DTX2
dgv232e55	Chr.7:76374650 - 77109274 on Build GRCh38	Gain	SPDYE16 SPDYE18 PMS2P9 ZP3 LOC105375355 FDPSP2 POMZP3 DTX2P1-UPK3BP1-PMS2P11 LOC100133091 SPDYE17 SSC4D DTX2
esv3613762	Chr.7:76395994 - 76401667 on Build GRCh38	Loss	ZP3 SSC4D
dgv233e55	Chr.7:76383349 - 77190972 on Build GRCh38	Loss	DTX2P1-UPK3BP1-PMS2P11 SPDYE16 SPDYE18 PMS2P9 ZP3 LOC105375355 FDPSP2 POMZP3 LOC100133091 CCDC146 SPDYE17 SSC4D DTX2
nsv1028665	Chr.7:76336044 - 76445651 on Build GRCh38	Gain	ZP3 YWHAG SSC4D
dgv120n16	Chr.7:75440769 - 76641919 on Build GRCh38	Deletion	YWHAG RHBDD2 SNORA14A POMZP3 LOC100133091 SPDYE5 HIP1 POR MIR4651 SSC4D STYXL1 GTF2IP7 CCL24 HSPB1 TMEM120A POM121C PMS2P3 SPDYE16 ZP3 LOC105375355 FDPSP2 SRRM3 MDH2 CCL26 LOC107986711 DTX2

More Information

Additional Information:

For this assay, SNP(s) [rs77540738] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

serine protease

Gene Ontology Categories:

Process(es)

receptor-mediated endocytosis

Function(s)

scavenger receptor activity