Hs03642689_cn

• Gene Symbol: SSC4D
• Assay Reference Genome Location: Chr.7:76397027 on build GRCh38
• Cytoband: 7q11.23

Target Gene Details

• Entrez Gene ID: 136853
• Gene Name: scavenger receptor cysteine rich family member with 4 domains
• Gene Aliases: S4D-SRCRB, SRCRB-S4D, SRCRB4D
• Location: Chr.7:76389329-76410025 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SSC4D	NM_080744.1			NP_542782.1
	XM_017011750.1			XP_016867239.1
	AJ312755.1			CAC84764.1
	AK172783.1			BAD18764.1
	BC113840.1			AAI13841.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2422494	Chr.7:76286900 - 76984449 on Build GRCh38	Duplication	SRRM3 YWHAG LOC100133091 SPDYE16 SSC4D ZP3 LOC105375355 POMZP3 HSPB1 DTX2 FDPSP2 DTX2P1-UPK3BP1-PMS2P11
nsv428174	Chr.7:76305019 - 77220062 on Build GRCh38	Gain	YWHAG LOC100133091 SSC4D POMZP3 CCDC146 DTX2P1-UPK3BP1-PMS2P11 SPDYE17 SPDYE16 PMS2P9 ZP3 LOC105375355 SPDYE18 DTX2 FGL2 FDPSP2
nsv528969	Chr.7:75074053 - 76920728 on Build GRCh38	Gain	SRRM3 SSC4D CCL24 STAG3L1 POMZP3 PMS2P3 MIR4651 PMS2P10 SPDYE16 SPDYE5 SNORA14A ZP3 NCF1C HSPB1 DTX2 FDPSP2 TMEM120A HIP1 STYXL1 NSUN5P1 YWHAG LOC100133091 LOC107986711 RHBDD2 PMS2P2 LOC441259 POM121C GTF2IRD2B TRIM73 POR LOC541473 MDH2 LOC105375355 GTF2IP7 CCL26 GTF2IP1
dgv232e55	Chr.7:76374650 - 77109274 on Build GRCh38	Gain	SPDYE17 LOC100133091 SPDYE16 PMS2P9 SSC4D ZP3 LOC105375355 POMZP3 SPDYE18 DTX2 FDPSP2 DTX2P1-UPK3BP1-PMS2P11
esv3613762	Chr.7:76395994 - 76401667 on Build GRCh38	Loss	SSC4D ZP3
dgv233e55	Chr.7:76383349 - 77190972 on Build GRCh38	Loss	LOC100133091 SSC4D POMZP3 CCDC146 DTX2P1-UPK3BP1-PMS2P11 SPDYE17 SPDYE16 PMS2P9 ZP3 LOC105375355 SPDYE18 DTX2 FDPSP2
nsv1028665	Chr.7:76336044 - 76445651 on Build GRCh38	Gain	YWHAG SSC4D ZP3
dgv120n16	Chr.7:75440769 - 76641919 on Build GRCh38	Deletion	SRRM3 SSC4D CCL24 POMZP3 PMS2P3 MIR4651 SPDYE16 SPDYE5 SNORA14A ZP3 HSPB1 DTX2 FDPSP2 TMEM120A HIP1 STYXL1 YWHAG LOC100133091 LOC107986711 RHBDD2 POM121C POR MDH2 LOC105375355 GTF2IP7 CCL26

More Information

Additional Information:

For this assay, SNP(s) [rs78439829] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

serine protease

Gene Ontology Categories:

Process(es)

receptor-mediated endocytosis

Function(s)

scavenger receptor activity