Hs03681471_cn

• Gene Symbol: SPATC1
• Assay Reference Genome Location: Chr.8:144045234 on build GRCh38
• Cytoband: 8q24.3

Target Gene Details

• Entrez Gene ID: 375686
• Gene Name: spermatogenesis and centriole associated 1
• Gene Aliases: SPATA15
• Location: Chr.8:144010992-144047114 on Build GRCh38
• Assay Gene Location: Within Intron 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPATC1	NM_001134374.1			NP_001127846.1
	NM_198572.2			NP_940974.2
	XM_011517021.1			XP_011515323.1
	XM_011517022.2			XP_011515324.1
	XM_011517023.2			XP_011515325.1
	XM_011517024.2			XP_011515326.1
	XM_011517025.2			XP_011515327.1
	XM_017013399.1			XP_016868888.1
	AB092352.1			BAD08232.1
	AK301710.1
	BC050390.1			AAH50390.1
	BC053547.1			AAH53547.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv470249	Chr.8:143889098 - 144519234 on Build GRCh38	Loss	CYHR1 FOXH1 ADCK5 KIFC2 MIR6848 TONSL LOC101928902 MROH1 GPAA1 CPSF1 TONSL-AS1 MIR939 EXOSC4 FBXL6 SLC52A2 MIR6846 CYC1 VPS28 MIR6893 MIR7112 WDR97 LRRC14 GRINA GPT SLC39A4 MIR6847 SHARPIN MAF1 HGH1 MIR1234 MIR661 SPATC1 PPP1R16A SCX HSF1 OPLAH DGAT1 MIR6849 SMPD5 RECQL4 PLEC TMEM249 LOC101928953 MFSD3 PARP10 BOP1 SCRT1
nsv6446	Chr.8:144012529 - 144050050 on Build GRCh38	Insertion	SMPD5 SPATC1
nsv612914	Chr.8:143972494 - 144120626 on Build GRCh38	Loss	WDR97 GRINA MIR6847 SHARPIN MAF1 GPAA1 SPATC1 OPLAH EXOSC4 SMPD5 PLEC MIR6846 CYC1 PARP10
nsv950015	Chr.8:143866633 - 144125597 on Build GRCh38	Deletion	WDR97 GRINA MIR6847 SHARPIN MAF1 GPAA1 MIR661 EPPK1 SPATC1 OPLAH EXOSC4 SMPD5 PLEC MIR6846 CYC1 PARP10
nsv1161815	Chr.8:143775169 - 144080674 on Build GRCh38	Deletion	PUF60 MIR6845 LOC642574 GRINA MIR6847 SCRIB MIR937 MIR661 EPPK1 SPATC1 OPLAH EXOSC4 SMPD5 PLEC MIR6846 PARP10 NRBP2
nsv612916	Chr.8:144044224 - 144056712 on Build GRCh38	Loss	OPLAH SMPD5 SPATC1
nsv612915	Chr.8:144007080 - 144224185 on Build GRCh38	Loss	WDR97 MIR6847 SHARPIN MAF1 HGH1 MROH1 GPAA1 SPATC1 OPLAH EXOSC4 SMPD5 MIR6846 CYC1
nsv612917	Chr.8:144045204 - 144063598 on Build GRCh38	Loss	OPLAH SMPD5 MIR6846 SPATC1
nsv515809	Chr.8:143904439 - 144519234 on Build GRCh38	Gain+Loss	CYHR1 FOXH1 ADCK5 KIFC2 MIR6848 TONSL LOC101928902 MROH1 GPAA1 CPSF1 TONSL-AS1 MIR939 EXOSC4 FBXL6 SLC52A2 MIR6846 CYC1 VPS28 MIR6893 MIR7112 WDR97 LRRC14 GRINA GPT SLC39A4 MIR6847 SHARPIN MAF1 HGH1 MIR1234 MIR661 SPATC1 PPP1R16A SCX HSF1 OPLAH DGAT1 MIR6849 SMPD5 RECQL4 PLEC TMEM249 LOC101928953 MFSD3 PARP10 BOP1 SCRT1
dgv12431n54	Chr.8:143845100 - 144161320 on Build GRCh38	Loss	WDR97 GRINA MIR6847 SHARPIN MAF1 HGH1 MROH1 GPAA1 MIR661 EPPK1 SPATC1 OPLAH EXOSC4 SMPD5 PLEC MIR6846 CYC1 PARP10
nsv428208	Chr.8:144041826 - 144722291 on Build GRCh38	Gain	CYHR1 FOXH1 ADCK5 KIFC2 MIR6848 TONSL LOC101928902 MROH1 GPAA1 CPSF1 TONSL-AS1 LRRC24 MIR939 ARHGAP39 EXOSC4 FBXL6 SLC52A2 MIR6846 CYC1 VPS28 MIR6893 MIR7112 WDR97 LRRC14 GPT SLC39A4 MIR6847 SHARPIN MAF1 HGH1 MIR1234 SPATC1 PPP1R16A ZNF251 SCX HSF1 C8orf82 OPLAH DGAT1 MIR6849 SMPD5 RECQL4 TMEM249 LOC101928953 MFSD3 BOP1 SCRT1
nsv470250	Chr.8:143917934 - 144097007 on Build GRCh38	Gain	OPLAH GRINA EXOSC4 MIR6847 SMPD5 PLEC MIR6846 CYC1 PARP10 GPAA1 MIR661 SPATC1
dgv12433n54	Chr.8:143902404 - 144120626 on Build GRCh38	Gain	WDR97 GRINA MIR6847 SHARPIN MAF1 GPAA1 MIR661 SPATC1 OPLAH EXOSC4 SMPD5 PLEC MIR6846 CYC1 PARP10
nsv612906	Chr.8:143917935 - 144090784 on Build GRCh38	Loss	OPLAH GRINA EXOSC4 MIR6847 SMPD5 PLEC MIR6846 PARP10 GPAA1 MIR661 SPATC1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation