Hs03701054_cn

• Gene Symbol: NALT1
• Assay Reference Genome Location: Chr.9:136548160 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 101928483
• Gene Name: NOTCH1 associated lncRNA in T-cell acute lymphoblastic leukemia 1
• Gene Aliases: LINC01573, MIR4674HG, NALT
• Location: Chr.9:136547842-136549744 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NALT1	NR_121577.1
	AW449200.1
	DA924831.1	2	382

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	AGPAT2 MIR4674 HSPC324 NALT1 MIR4673 FAM69B SNHG7 LINC01451 NOTCH1 MIR126 EGFL7
nsv615965	Chr.9:136501956 - 136563054 on Build GRCh38	Loss	MIR4674 NALT1 MIR4673 NOTCH1
nsv615967	Chr.9:136510443 - 136598337 on Build GRCh38	Loss	MIR4674 NALT1 MIR4673 NOTCH1
nsv1161916	Chr.9:136473005 - 136561387 on Build GRCh38	Deletion	MIR4674 NALT1 MIR4673 SEC16A C9orf163 NOTCH1
nsv1161917	Chr.9:136509318 - 136623715 on Build GRCh38	Deletion	MIR4674 NALT1 MIR4673 LINC01451 NOTCH1
nsv466673	Chr.9:136508507 - 136563054 on Build GRCh38	Gain	MIR4674 NALT1 MIR4673 NOTCH1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	FUT7 MIR4673 LCNL1 LCN8 SNORA17B MAMDC4 SAPCD2 EDF1 LCN10 PHPT1 MIR4292 DNLZ FAM69B SNHG7 LOC101930307 EGFL7 C8G NPDC1 ABCA2 CLIC3 RABL6 LCN12 HSPC324 PRR31 INPP5E GRIN1 NOTCH1 FBXW5 ENTPD2 C9orf172 LRRC26 TMEM141 C9orf163 LCN15 CARD9 SDCCAG3 CCDC183-AS1 C9orf142 MIR4479 UAP1L1 SNAPC4 MIR126 TRAF2 PMPCA SEC16A LOC100128593 MIR6722 DPP7 MAN1B1-AS1 SNORA17A PTGDS C9orf139 CCDC183 AGPAT2 MIR4674 NALT1 TMEM210 LCN6 LINC01451 MAN1B1 MIR3621
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	LCN15 MIR4673 CARD9 SDCCAG3 LCN8 CCDC183-AS1 MIR4479 SNAPC4 MIR126 SNORA17B TRAF2 MAMDC4 EDF1 LCN10 PMPCA PHPT1 MIR4292 DNLZ FAM69B SNHG7 SEC16A EGFL7 LOC100128593 MIR6722 GPSM1 RABL6 HSPC324 INPP5E SNORA17A NOTCH1 CCDC183 AGPAT2 MIR4674 C9orf172 NALT1 LCN6 TMEM141 C9orf163 LINC01451
nsv6768	Chr.9:136537864 - 136570316 on Build GRCh38	Insertion	MIR4674 NALT1 NOTCH1
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	LCN15 HSPC324 MIR4673 LCN8 SNORA17A NOTCH1 MIR126 SNORA17B AGPAT2 MIR4674 LCN10 NALT1 LCN6 FAM69B SNHG7 LINC01451 EGFL7 LOC100128593 MIR6722
esv30005	Chr.9:136481974 - 136563014 on Build GRCh38	Loss	MIR4674 NALT1 MIR4673 SEC16A C9orf163 NOTCH1
nsv951202	Chr.9:135770355 - 136558248 on Build GRCh38	Deletion	LHX3 MIR4673 CARD9 SDCCAG3 SNAPC4 DKFZP434A062 UBAC1 ESP33 NACC2 PMPCA CCDC187 DNLZ SEC16A C9orf69 LOC105376323 GPSM1 LOC107987142 LOC101928722 KCNT1 INPP5E NOTCH1 CAMSAP1 MIR4674 NALT1 QSOX2 C9orf163

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation