Hs03705952_cn

• Gene Symbol: NELFB
• Assay Reference Genome Location: Chr.9:137259463 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 25920
• Gene Name: negative elongation factor complex member B
• Gene Aliases: COBRA1, NELF-B
• Location: Chr.9:137255300-137273548 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NELFB	NM_015456.4			NP_056271.3
	AF464935.1			AAL69965.1
	AK022651.1			BAB14157.1
	AK091056.1
	AL050280.1			CAB43381.3
	BC011892.1			AAH11892.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	FAM166A TOR4A ANAPC2 NRARP SLC34A3 NDOR1 SSNA1 RNF208 NELFB STPG3 CYSRT1 TPRN RNF224 EXD3 TUBB4B C9orf173-AS1 TMEM203
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	FAM166A TOR4A STPG3 CYSRT1 NRARP SLC34A3 RNF224 EXD3 TUBB4B NELFB C9orf173-AS1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	NPDC1 MAN1B1 MIR3621 PHPT1 RNF208 MIR7114 MAMDC4 NSMF C9orf172 CCDC183 PTGDS LOC101930307 FBXW5 MIR4479 RNF224 EXD3 UAP1L1 SAPCD2 NOXA1 C9orf142 FUT7 NRARP SLC34A3 DPP7 LCNL1 PNPLA7 EDF1 C9orf139 GRIN1 TUBB4B CLIC3 C9orf173-AS1 LCN12 FAM166A TOR4A TRAF2 CCDC183-AS1 NDOR1 RABL6 SSNA1 C8G PRR31 MAN1B1-AS1 MIR4292 ANAPC2 ABCA2 NELFB ENTPD2 ENTPD8 STPG3 LRRC26 CYSRT1 TPRN TMEM210 TMEM203
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	FAM166A TOR4A ANAPC2 MIR3621 NRARP SLC34A3 NDOR1 SSNA1 RNF208 NELFB STPG3 LRRC26 CYSRT1 GRIN1 TPRN TMEM210 RNF224 EXD3 TUBB4B C9orf173-AS1 TMEM203
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	FAM166A TOR4A ANAPC2 MIR3621 NRARP SLC34A3 NDOR1 SSNA1 RNF208 NELFB ENTPD8 STPG3 LRRC26 CYSRT1 GRIN1 TPRN TMEM210 RNF224 EXD3 TUBB4B C9orf173-AS1 TMEM203 NOXA1
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	NPDC1 MAN1B1 MIR3621 PHPT1 RNF208 LCN6 MAMDC4 LCN8 FAM69B C9orf172 CCDC183 PTGDS LOC101930307 FBXW5 MIR4479 RNF224 EXD3 UAP1L1 SAPCD2 C9orf142 FUT7 TMEM141 NRARP SLC34A3 LOC100128593 SNORA17B LINC01451 DPP7 LCNL1 LCN10 SNHG7 EDF1 C9orf139 GRIN1 AGPAT2 TUBB4B CLIC3 C9orf173-AS1 LCN12 FAM166A TOR4A TRAF2 CCDC183-AS1 NDOR1 RABL6 SSNA1 C8G PRR31 LCN15 MAN1B1-AS1 MIR4292 HSPC324 ANAPC2 ABCA2 NELFB ENTPD2 EGFL7 STPG3 SNORA17A LRRC26 CYSRT1 TPRN TMEM210 MIR6722 MIR126 TMEM203

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
negative regulation of transcription elongation from RNA polymerase II promoter
positive regulation of viral transcription

Function(s)

protein binding