Hs03709704_cn

• Gene Symbol: NPDC1
• Assay Reference Genome Location: Chr.9:137044197 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 56654
• Gene Name: neural proliferation, differentiation and control 1
• Gene Aliases: CAB, CAB-, CAB-1, CAB1, NPDC-1
• Location: Chr.9:137039457-137046224 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NPDC1	NM_015392.3			NP_056207.3
	AF272357.1			AAF76225.1
	AF285836.1			AAK27328.1
	AF327349.1			AAL56010.1
	AK074793.1			BAC11212.1
	AK225091.1
	BC004217.2			AAH04217.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	PRR31 NPDC1 SAPCD2 DPP7 TMEM210 LRRC26 CLIC3 C9orf142 MIR3621 LCNL1 GRIN1 MAN1B1-AS1 FUT7 ENTPD2 ABCA2 UAP1L1 PTGDS MAN1B1 LOC101930307 C9orf139
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	MAMDC4 MIR7114 RABL6 NSMF LCNL1 C9orf173-AS1 GRIN1 ENTPD2 EXD3 UAP1L1 C8G TRAF2 ENTPD8 LRRC26 TPRN CLIC3 CYSRT1 MAN1B1-AS1 SSNA1 FUT7 MIR4479 CCDC183 ABCA2 LCN12 PHPT1 CCDC183-AS1 NELFB LOC101930307 PRR31 NRARP TMEM203 C9orf142 MIR3621 C9orf172 ANAPC2 PNPLA7 MAN1B1 TUBB4B NPDC1 NDOR1 NOXA1 FBXW5 SAPCD2 DPP7 TMEM210 RNF224 STPG3 EDF1 FAM166A MIR4292 PTGDS RNF208 SLC34A3 TOR4A C9orf139
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	PRR31 NPDC1 SAPCD2 DPP7 CLIC3 C9orf142 LCNL1 MAN1B1-AS1 FUT7 ENTPD2 ABCA2 UAP1L1 LCN12 PTGDS C8G MAN1B1 LOC101930307 C9orf139
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MAMDC4 FAM69B RABL6 LCN15 LOC100128593 TMEM141 LCNL1 HSPC324 GRIN1 DNLZ ENTPD2 MIR4674 LCN8 UAP1L1 C8G TRAF2 INPP5E SNHG7 SNORA17B LRRC26 CLIC3 AGPAT2 MAN1B1-AS1 LCN6 FUT7 MIR4479 SNAPC4 CCDC183 ABCA2 LCN12 PHPT1 CCDC183-AS1 LCN10 LOC101930307 MIR6722 PRR31 C9orf163 EGFL7 C9orf142 SDCCAG3 MIR3621 C9orf172 PMPCA SEC16A MIR4673 LINC01451 MAN1B1 NPDC1 FBXW5 SAPCD2 DPP7 MIR126 TMEM210 NALT1 EDF1 CARD9 NOTCH1 MIR4292 PTGDS SNORA17A C9orf139
nsv616005	Chr.9:137036493 - 137173890 on Build GRCh38	Loss	NPDC1 SAPCD2 DPP7 TMEM210 LRRC26 MIR3621 GRIN1 MAN1B1-AS1 ENTPD2 UAP1L1 MAN1B1 LOC101930307 C9orf139
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	NPDC1 SAPCD2 DPP7 TMEM210 LRRC26 MIR3621 GRIN1 MAN1B1-AS1 SSNA1 FUT7 ENTPD2 ANAPC2 UAP1L1 MAN1B1 LOC101930307 C9orf139
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	MAMDC4 FAM69B RABL6 LCN15 LOC100128593 TMEM141 LCNL1 HSPC324 C9orf173-AS1 GRIN1 ENTPD2 LCN8 EXD3 UAP1L1 C8G TRAF2 SNHG7 SNORA17B LRRC26 TPRN CLIC3 AGPAT2 CYSRT1 MAN1B1-AS1 LCN6 SSNA1 FUT7 MIR4479 CCDC183 ABCA2 LCN12 PHPT1 CCDC183-AS1 LCN10 NELFB LOC101930307 MIR6722 PRR31 NRARP TMEM203 EGFL7 C9orf142 MIR3621 C9orf172 ANAPC2 LINC01451 MAN1B1 TUBB4B NPDC1 NDOR1 FBXW5 SAPCD2 DPP7 MIR126 TMEM210 RNF224 STPG3 EDF1 FAM166A MIR4292 PTGDS RNF208 SLC34A3 TOR4A SNORA17A C9orf139
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	NPDC1 ABCA2 FUT7 C9orf139 ENTPD2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Function(s)

protein binding