Hs03709845_cn

• Gene Symbol: NPDC1
• Assay Reference Genome Location: Chr.9:137043654 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 56654
• Gene Name: neural proliferation, differentiation and control 1
• Gene Aliases: CAB, CAB-, CAB-1, CAB1, NPDC-1
• Location: Chr.9:137039457-137046224 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NPDC1	NM_015392.3			NP_056207.3
	AF272357.1			AAF76225.1
	AF285836.1			AAK27328.1
	AF327349.1			AAL56010.1
	AK054950.1	1	439
	AK074793.1			BAC11212.1
	AK225091.1
	BC004217.2			AAH04217.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	MIR3621 TMEM210 PTGDS MAN1B1 MAN1B1-AS1 LRRC26 ABCA2 FUT7 UAP1L1 DPP7 C9orf142 GRIN1 LCNL1 PRR31 CLIC3 ENTPD2 NPDC1 LOC101930307 SAPCD2 C9orf139
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	FBXW5 TPRN EXD3 LCN12 TRAF2 PNPLA7 LRRC26 RABL6 ABCA2 FUT7 DPP7 NDOR1 LCNL1 C8G NOXA1 PHPT1 RNF224 TMEM210 PTGDS MAN1B1 MAN1B1-AS1 MIR4292 CLIC3 C9orf139 MAMDC4 MIR7114 NSMF CYSRT1 ENTPD8 CCDC183-AS1 C9orf173-AS1 NRARP TUBB4B TOR4A C9orf172 MIR4479 TMEM203 EDF1 SLC34A3 NELFB MIR3621 SSNA1 STPG3 FAM166A UAP1L1 CCDC183 RNF208 C9orf142 ANAPC2 GRIN1 PRR31 ENTPD2 NPDC1 LOC101930307 SAPCD2
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	PTGDS MAN1B1 LCN12 MAN1B1-AS1 ABCA2 FUT7 UAP1L1 DPP7 C9orf142 LCNL1 C8G PRR31 CLIC3 ENTPD2 NPDC1 LOC101930307 SAPCD2 C9orf139
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	C9orf163 TMEM141 FBXW5 SNAPC4 LCN15 CARD9 LCN12 TRAF2 MIR4674 LRRC26 RABL6 MIR4673 ABCA2 FUT7 DPP7 LCN8 LCNL1 C8G SEC16A DNLZ AGPAT2 PHPT1 TMEM210 PTGDS MAN1B1 LOC100128593 MAN1B1-AS1 MIR4292 CLIC3 PMPCA C9orf139 SNORA17B MAMDC4 EGFL7 SNHG7 CCDC183-AS1 INPP5E NOTCH1 LINC01451 SDCCAG3 C9orf172 MIR4479 LCN6 EDF1 MIR3621 FAM69B HSPC324 LCN10 MIR6722 UAP1L1 CCDC183 C9orf142 MIR126 GRIN1 PRR31 ENTPD2 NPDC1 LOC101930307 NALT1 SAPCD2 SNORA17A
nsv616005	Chr.9:137036493 - 137173890 on Build GRCh38	Loss	MIR3621 TMEM210 MAN1B1 MAN1B1-AS1 LRRC26 UAP1L1 DPP7 GRIN1 ENTPD2 NPDC1 LOC101930307 SAPCD2 C9orf139
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	MIR3621 TMEM210 MAN1B1 SSNA1 MAN1B1-AS1 LRRC26 FUT7 UAP1L1 DPP7 ANAPC2 GRIN1 ENTPD2 NPDC1 LOC101930307 SAPCD2 C9orf139
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ABCA2 FUT7 ENTPD2 NPDC1 C9orf139
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	TMEM141 FBXW5 TPRN EXD3 LCN15 LCN12 TRAF2 LRRC26 RABL6 ABCA2 FUT7 DPP7 NDOR1 LCN8 LCNL1 C8G AGPAT2 PHPT1 RNF224 TMEM210 PTGDS MAN1B1 LOC100128593 MAN1B1-AS1 MIR4292 CLIC3 C9orf139 SNORA17B MAMDC4 EGFL7 SNHG7 CYSRT1 CCDC183-AS1 C9orf173-AS1 NRARP LINC01451 TUBB4B TOR4A C9orf172 MIR4479 TMEM203 LCN6 EDF1 SLC34A3 NELFB MIR3621 FAM69B HSPC324 SSNA1 STPG3 LCN10 FAM166A MIR6722 UAP1L1 CCDC183 RNF208 C9orf142 ANAPC2 MIR126 GRIN1 PRR31 ENTPD2 NPDC1 LOC101930307 SAPCD2 SNORA17A

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Function(s)

protein binding