Hs03715702_cn

• Gene Symbol: SDCCAG3
• Assay Reference Genome Location: Chr.9:136409729 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10807
• Gene Name: serologically defined colon cancer antigen 3
• Gene Aliases: NY-CO-3
• Location: Chr.9:136401922-136410602 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SDCCAG3	NM_001039707.1			NP_001034796.1
	NM_001039708.1			NP_001034797.1
	NM_006643.3			NP_006634.3
	XM_005266050.3			XP_005266107.1
	XM_005266051.3			XP_005266108.1
	XM_011518157.2			XP_011516459.1
	XM_017014218.1			XP_016869707.1
	XM_017014219.1			XP_016869708.1
	AL559847.3
	AY349357.1			AAQ56721.1
	BC014515.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv825174	Chr.9:136401929 - 136413005 on Build GRCh38	Gain	SDCCAG3 PMPCA
nsv831760	Chr.9:136366430 - 136480358 on Build GRCh38	Loss	CARD9 SEC16A SDCCAG3 INPP5E PMPCA SNAPC4
nsv509333	Chr.9:136346749 - 136440541 on Build GRCh38	Insertion	CARD9 SEC16A SDCCAG3 INPP5E DNLZ PMPCA GPSM1 SNAPC4
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	SNORA17A LCN15 CCDC183-AS1 LRRC26 SEC16A PRR31 MIR126 LINC01451 LOC101930307 C9orf163 MAN1B1 SAPCD2 LCN10 RABL6 MIR4479 LCN6 NALT1 TMEM141 LCN12 LCN8 HSPC324 PMPCA FUT7 EGFL7 EDF1 FAM69B NPDC1 MIR3621 TMEM210 MIR4292 SNAPC4 CARD9 C9orf142 MIR4673 C8G SDCCAG3 CLIC3 MIR6722 C9orf172 FBXW5 AGPAT2 GRIN1 MAN1B1-AS1 ENTPD2 MIR4674 SNHG7 DNLZ SNORA17B PTGDS TRAF2 C9orf139 INPP5E DPP7 CCDC183 PHPT1 LCNL1 MAMDC4 LOC100128593 UAP1L1 NOTCH1 ABCA2
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	SNORA17A LCN15 CCDC183-AS1 C9orf172 AGPAT2 SEC16A MIR4674 MIR126 LINC01451 C9orf163 LCN10 RABL6 MIR4479 LCN6 SNHG7 NALT1 TMEM141 LCN8 HSPC324 DNLZ PMPCA SNORA17B EGFL7 EDF1 TRAF2 FAM69B INPP5E MIR4292 CCDC183 GPSM1 SNAPC4 PHPT1 CARD9 MIR4673 MAMDC4 LOC100128593 SDCCAG3 NOTCH1 MIR6722
nsv825173	Chr.9:135892081 - 136495763 on Build GRCh38	Gain	NACC2 UBAC1 LHX3 CCDC187 SEC16A QSOX2 INPP5E DKFZP434A062 LOC105376323 LOC101928722 GPSM1 SNAPC4 C9orf69 C9orf163 CARD9 SDCCAG3 NOTCH1 ESP33 DNLZ PMPCA LOC107987142 CAMSAP1
nsv615963	Chr.9:136386314 - 136474501 on Build GRCh38	Loss	SEC16A SDCCAG3 INPP5E PMPCA SNAPC4
nsv951202	Chr.9:135770355 - 136558248 on Build GRCh38	Deletion	NACC2 UBAC1 SEC16A DKFZP434A062 LOC105376323 MIR4674 KCNT1 C9orf163 NALT1 DNLZ PMPCA LOC107987142 CAMSAP1 LHX3 CCDC187 QSOX2 INPP5E LOC101928722 GPSM1 SNAPC4 C9orf69 CARD9 MIR4673 SDCCAG3 NOTCH1 ESP33

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cell cycle
protein transport
regulation of cytokinesis
cell division
retrograde transport, endosome to plasma membrane

Function(s)

protein binding