Hs03717626_cn

• Gene Symbol: NALT1
• Assay Reference Genome Location: Chr.9:136548723 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 101928483
• Gene Name: NOTCH1 associated lncRNA in T-cell acute lymphoblastic leukemia 1
• Gene Aliases: LINC01573, MIR4674HG, NALT
• Location: Chr.9:136547842-136549744 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NALT1	NR_121577.1
	AW449200.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	AGPAT2 HSPC324 SNHG7 FAM69B MIR126 LINC01451 NALT1 NOTCH1 MIR4673 EGFL7 MIR4674
nsv615965	Chr.9:136501956 - 136563054 on Build GRCh38	Loss	NALT1 NOTCH1 MIR4673 MIR4674
nsv615967	Chr.9:136510443 - 136598337 on Build GRCh38	Loss	NALT1 NOTCH1 MIR4673 MIR4674
nsv1161916	Chr.9:136473005 - 136561387 on Build GRCh38	Deletion	C9orf163 NALT1 NOTCH1 MIR4673 SEC16A MIR4674
nsv1161917	Chr.9:136509318 - 136623715 on Build GRCh38	Deletion	LINC01451 NALT1 NOTCH1 MIR4673 MIR4674
nsv466673	Chr.9:136508507 - 136563054 on Build GRCh38	Gain	NALT1 NOTCH1 MIR4673 MIR4674
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MIR6722 C9orf142 C9orf139 PMPCA LCNL1 LOC101930307 SNAPC4 SNHG7 FAM69B FBXW5 MIR126 PHPT1 LOC100128593 MAN1B1 SNORA17A UAP1L1 EDF1 GRIN1 LCN6 TMEM141 LCN12 SNORA17B RABL6 INPP5E LCN10 MAN1B1-AS1 PTGDS NPDC1 NOTCH1 LCN8 CCDC183 C8G C9orf163 LCN15 ABCA2 MIR4673 ENTPD2 DPP7 AGPAT2 FUT7 LRRC26 NALT1 MIR4292 SAPCD2 EGFL7 MIR4674 HSPC324 LINC01451 PRR31 SEC16A TMEM210 DNLZ MIR3621 CLIC3 TRAF2 CCDC183-AS1 CARD9 MAMDC4 MIR4479 C9orf172 SDCCAG3
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR6722 C9orf163 LCN15 GPSM1 PMPCA MIR4673 SNAPC4 AGPAT2 SNHG7 FAM69B MIR126 PHPT1 LOC100128593 NALT1 MIR4292 SNORA17A EGFL7 MIR4674 EDF1 HSPC324 LCN6 TMEM141 LINC01451 SNORA17B RABL6 SEC16A INPP5E DNLZ LCN10 TRAF2 CCDC183-AS1 CARD9 MAMDC4 NOTCH1 MIR4479 LCN8 CCDC183 C9orf172 SDCCAG3
nsv6768	Chr.9:136537864 - 136570316 on Build GRCh38	Insertion	NALT1 NOTCH1 MIR4674
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	MIR6722 HSPC324 LCN6 LINC01451 LCN15 SNORA17B MIR4673 AGPAT2 SNHG7 LCN10 FAM69B MIR126 LOC100128593 NALT1 SNORA17A NOTCH1 LCN8 EGFL7 MIR4674
esv30005	Chr.9:136481974 - 136563014 on Build GRCh38	Loss	C9orf163 NALT1 NOTCH1 MIR4673 SEC16A MIR4674
nsv951202	Chr.9:135770355 - 136558248 on Build GRCh38	Deletion	LOC101928722 C9orf163 CAMSAP1 GPSM1 PMPCA MIR4673 ESP33 SNAPC4 UBAC1 DKFZP434A062 QSOX2 LOC107987142 KCNT1 NALT1 MIR4674 CCDC187 NACC2 LHX3 SEC16A C9orf69 INPP5E DNLZ LOC105376323 CARD9 NOTCH1 SDCCAG3

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation