Hs03720046_cn

• Gene Symbol: NALT1
• Assay Reference Genome Location: Chr.9:136549777 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 101928483
• Gene Name: NOTCH1 associated lncRNA in T-cell acute lymphoblastic leukemia 1
• Gene Aliases: LINC01573, MIR4674HG, NALT
• Location: Chr.9:136547842-136549744 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NALT1	NR_121577.1
	AW449200.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	MIR4674 SNHG7 FAM69B HSPC324 EGFL7 MIR126 NOTCH1 AGPAT2 MIR4673 NALT1 LINC01451
nsv615965	Chr.9:136501956 - 136563054 on Build GRCh38	Loss	MIR4674 NOTCH1 MIR4673 NALT1
nsv615967	Chr.9:136510443 - 136598337 on Build GRCh38	Loss	MIR4674 NOTCH1 MIR4673 NALT1
nsv1161916	Chr.9:136473005 - 136561387 on Build GRCh38	Deletion	MIR4674 NOTCH1 SEC16A MIR4673 NALT1 C9orf163
nsv1161917	Chr.9:136509318 - 136623715 on Build GRCh38	Deletion	MIR4674 NOTCH1 MIR4673 NALT1 LINC01451
nsv466673	Chr.9:136508507 - 136563054 on Build GRCh38	Gain	MIR4674 NOTCH1 MIR4673 NALT1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	LCN15 PHPT1 MIR3621 SNAPC4 EDF1 NALT1 MIR4479 UAP1L1 SNHG7 FUT7 TMEM141 SAPCD2 FBXW5 SNORA17A PTGDS MIR4674 MAMDC4 HSPC324 DPP7 SEC16A C9orf172 LCN8 LCNL1 MIR6722 INPP5E MIR4292 NOTCH1 ABCA2 AGPAT2 MIR4673 CARD9 LOC100128593 SDCCAG3 EGFL7 RABL6 LRRC26 MAN1B1 PRR31 CCDC183-AS1 MAN1B1-AS1 C9orf142 ENTPD2 TMEM210 FAM69B TRAF2 LCN10 NPDC1 C9orf163 CLIC3 C8G DNLZ LOC101930307 LCN12 C9orf139 LCN6 PMPCA SNORA17B GRIN1 CCDC183 MIR126 LINC01451
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	LCN15 PHPT1 CARD9 LOC100128593 SDCCAG3 EGFL7 RABL6 SNAPC4 CCDC183-AS1 GPSM1 EDF1 NALT1 MIR4479 SNHG7 FAM69B TRAF2 LCN10 TMEM141 C9orf163 DNLZ SNORA17A MIR4674 MAMDC4 HSPC324 LCN6 PMPCA SEC16A SNORA17B C9orf172 LCN8 CCDC183 MIR6722 INPP5E MIR4292 MIR126 NOTCH1 AGPAT2 MIR4673 LINC01451
nsv6768	Chr.9:136537864 - 136570316 on Build GRCh38	Insertion	MIR4674 NOTCH1 NALT1
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	LCN15 SNORA17A LOC100128593 MIR4674 HSPC324 EGFL7 LCN6 SNORA17B NALT1 LCN8 MIR6722 SNHG7 FAM69B LCN10 MIR126 NOTCH1 AGPAT2 MIR4673 LINC01451
esv30005	Chr.9:136481974 - 136563014 on Build GRCh38	Loss	MIR4674 NOTCH1 SEC16A MIR4673 NALT1 C9orf163
nsv951202	Chr.9:135770355 - 136558248 on Build GRCh38	Deletion	CARD9 SDCCAG3 C9orf69 SNAPC4 UBAC1 GPSM1 LHX3 NALT1 KCNT1 LOC105376323 C9orf163 DNLZ MIR4674 LOC107987142 LOC101928722 PMPCA SEC16A ESP33 DKFZP434A062 NACC2 INPP5E QSOX2 CAMSAP1 NOTCH1 CCDC187 MIR4673

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation