Hs03721824_cn

• Gene Symbol: C9orf173-AS1
• Assay Reference Genome Location: Chr.9:137250570 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 100129722
• Gene Name: C9orf173 antisense RNA 1
• Gene Aliases: -
• Location: Chr.9:137250219-137253497 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf173-AS1	NR_038389.1	4	1350
	AK097764.1	4	1350
	CB047271.1	1	358

Target Gene Details

• Entrez Gene ID: 401565
• Gene Name: family with sequence similarity 166 member A
• Gene Aliases: HSD46
• Location: Chr.9:137243583-137251193 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAM166A	XM_006717108.2	1	624	XP_006717171.2
	XM_011518694.1	1	624	XP_011516996.1
	XM_011518695.1	1	624	XP_011516997.1
	XM_011518696.2	1	624	XP_011516998.1
	XM_011518697.1	1	624	XP_011516999.1
	XM_017014718.1	1	624	XP_016870207.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	CYSRT1 RNF224 EXD3 NELFB RNF208 TPRN NRARP STPG3 TUBB4B TOR4A NDOR1 TMEM203 FAM166A SLC34A3 SSNA1 C9orf173-AS1 ANAPC2
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	CYSRT1 RNF224 EXD3 NELFB FAM166A SLC34A3 NRARP STPG3 TUBB4B TOR4A C9orf173-AS1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	RNF224 CCDC183 TMEM210 GRIN1 NOXA1 PRR31 ENTPD2 TRAF2 FUT7 C9orf142 NSMF C9orf139 CLIC3 MIR4479 PNPLA7 EXD3 UAP1L1 STPG3 TUBB4B MIR7114 MIR4292 TMEM203 SSNA1 PTGDS LCN12 ANAPC2 CYSRT1 ABCA2 NELFB RNF208 RABL6 TPRN TOR4A ENTPD8 NPDC1 SAPCD2 NDOR1 FAM166A SLC34A3 MAN1B1-AS1 LRRC26 FBXW5 DPP7 MAMDC4 NRARP MIR3621 LCNL1 LOC101930307 PHPT1 EDF1 C9orf172 C8G MAN1B1 CCDC183-AS1 C9orf173-AS1
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	CYSRT1 RNF224 EXD3 NELFB RNF208 TMEM210 TPRN GRIN1 NRARP STPG3 TUBB4B TOR4A MIR3621 NDOR1 TMEM203 FAM166A SLC34A3 SSNA1 C9orf173-AS1 LRRC26 ANAPC2
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	CYSRT1 RNF224 EXD3 NELFB RNF208 TMEM210 TPRN GRIN1 NRARP STPG3 TUBB4B TOR4A MIR3621 ENTPD8 NOXA1 NDOR1 TMEM203 FAM166A SLC34A3 SSNA1 C9orf173-AS1 LRRC26 ANAPC2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	RNF224 CCDC183 TMEM210 GRIN1 EGFL7 SNORA17A AGPAT2 PRR31 LCN10 ENTPD2 TRAF2 FUT7 LCN6 FAM69B C9orf142 C9orf139 CLIC3 MIR4479 LCN8 MIR126 EXD3 UAP1L1 STPG3 TUBB4B MIR4292 LINC01451 TMEM203 HSPC324 SSNA1 PTGDS LCN12 ANAPC2 CYSRT1 ABCA2 NELFB RNF208 RABL6 TPRN LOC100128593 TOR4A MIR6722 SNHG7 NPDC1 SAPCD2 NDOR1 FAM166A SLC34A3 MAN1B1-AS1 LRRC26 FBXW5 DPP7 MAMDC4 NRARP MIR3621 LCNL1 LOC101930307 PHPT1 EDF1 C9orf172 SNORA17B TMEM141 C8G MAN1B1 CCDC183-AS1 C9orf173-AS1 LCN15

More Information

• Set Membership: Intragenic, Exonic, DGV Variation