Hs03724285_cn

• Gene Symbol: SDCCAG3
• Assay Reference Genome Location: Chr.9:136408685 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10807
• Gene Name: serologically defined colon cancer antigen 3
• Gene Aliases: NY-CO-3
• Location: Chr.9:136401922-136410602 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SDCCAG3	NM_001039707.1			NP_001034796.1
	NM_001039708.1			NP_001034797.1
	NM_006643.3			NP_006634.3
	XM_005266050.3			XP_005266107.1
	XM_005266051.3			XP_005266108.1
	XM_011518157.2			XP_011516459.1
	XM_017014218.1			XP_016869707.1
	XM_017014219.1			XP_016869708.1
	AK001296.1			BAA91607.1
	AL559847.3
	AY349357.1			AAQ56721.1
	BC014515.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv825174	Chr.9:136401929 - 136413005 on Build GRCh38	Gain	PMPCA SDCCAG3
nsv831760	Chr.9:136366430 - 136480358 on Build GRCh38	Loss	PMPCA SDCCAG3 INPP5E CARD9 SNAPC4 SEC16A
nsv509333	Chr.9:136346749 - 136440541 on Build GRCh38	Insertion	PMPCA SDCCAG3 GPSM1 INPP5E CARD9 SNAPC4 SEC16A DNLZ
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MIR4292 TMEM141 HSPC324 TMEM210 NPDC1 SDCCAG3 MAN1B1-AS1 LOC101930307 C8G DPP7 SNORA17A CCDC183 EDF1 MIR126 LCN8 MIR4479 LCN12 C9orf142 LINC01451 ABCA2 LOC100128593 PHPT1 CLIC3 LCN15 CARD9 C9orf163 MIR6722 PRR31 SAPCD2 CCDC183-AS1 LRRC26 INPP5E SNAPC4 ENTPD2 FBXW5 SNORA17B MAMDC4 DNLZ FAM69B FUT7 TRAF2 UAP1L1 C9orf139 GRIN1 AGPAT2 MAN1B1 SEC16A EGFL7 MIR4674 NOTCH1 RABL6 PTGDS NALT1 SNHG7 LCNL1 C9orf172 PMPCA MIR4673 LCN10 MIR3621 LCN6
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	C9orf163 MIR6722 MIR4292 CCDC183-AS1 TMEM141 HSPC324 INPP5E SNAPC4 SNORA17B MAMDC4 DNLZ FAM69B TRAF2 SDCCAG3 GPSM1 AGPAT2 SEC16A EGFL7 SNORA17A CCDC183 EDF1 MIR4674 MIR126 LCN8 NOTCH1 RABL6 MIR4479 LINC01451 NALT1 SNHG7 C9orf172 LOC100128593 PMPCA MIR4673 LCN10 PHPT1 LCN6 LCN15 CARD9
nsv825173	Chr.9:135892081 - 136495763 on Build GRCh38	Gain	C9orf163 LHX3 CCDC187 CAMSAP1 NOTCH1 LOC101928722 INPP5E SNAPC4 ESP33 DKFZP434A062 DNLZ NACC2 PMPCA SDCCAG3 LOC105376323 GPSM1 LOC107987142 C9orf69 QSOX2 CARD9 UBAC1 SEC16A
nsv615963	Chr.9:136386314 - 136474501 on Build GRCh38	Loss	PMPCA SDCCAG3 INPP5E SNAPC4 SEC16A
nsv951202	Chr.9:135770355 - 136558248 on Build GRCh38	Deletion	C9orf163 CCDC187 CAMSAP1 LOC101928722 INPP5E SNAPC4 DKFZP434A062 DNLZ NACC2 SDCCAG3 GPSM1 LOC107987142 SEC16A LHX3 MIR4674 NOTCH1 KCNT1 ESP33 NALT1 PMPCA LOC105376323 MIR4673 C9orf69 QSOX2 CARD9 UBAC1

More Information

Additional Information:

For this assay, SNP(s) [rs73566906] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cell cycle
protein transport
regulation of cytokinesis
cell division
retrograde transport, endosome to plasma membrane

Function(s)

protein binding