Hs03725141_cn

• Gene Symbol: SDCCAG3
• Assay Reference Genome Location: Chr.9:136405237 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10807
• Gene Name: serologically defined colon cancer antigen 3
• Gene Aliases: NY-CO-3
• Location: Chr.9:136401922-136410602 on Build GRCh38
• Assay Gene Location: Overlaps Intron 6 - Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SDCCAG3	NM_001039707.1			NP_001034796.1
	NM_001039708.1			NP_001034797.1
	NM_006643.3			NP_006634.3
	XM_005266050.3			XP_005266107.1
	XM_005266051.3			XP_005266108.1
	XM_011518157.2			XP_011516459.1
	XM_017014218.1			XP_016869707.1
	XM_017014219.1			XP_016869708.1
	AF039688.1			AAC18037.1
	AK001296.1			BAA91607.1
	AY129014.1	1	541	AAM98757.1
	AY349357.1			AAQ56721.1
	BC014515.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv825174	Chr.9:136401929 - 136413005 on Build GRCh38	Gain	SDCCAG3 PMPCA
nsv831760	Chr.9:136366430 - 136480358 on Build GRCh38	Loss	CARD9 INPP5E SDCCAG3 SNAPC4 PMPCA SEC16A
nsv509333	Chr.9:136346749 - 136440541 on Build GRCh38	Insertion	DNLZ GPSM1 CARD9 INPP5E SDCCAG3 SNAPC4 PMPCA SEC16A
nsv825173	Chr.9:135892081 - 136495763 on Build GRCh38	Gain	ESP33 DNLZ C9orf69 CAMSAP1 LHX3 CARD9 DKFZP434A062 SNAPC4 LOC101928722 PMPCA C9orf163 SEC16A QSOX2 NACC2 NOTCH1 GPSM1 LOC107987142 CCDC187 INPP5E SDCCAG3 LOC105376323 UBAC1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MIR4673 DNLZ FUT7 LINC01451 PMPCA ABCA2 AGPAT2 PRR31 LCN10 PHPT1 CLIC3 EDF1 NALT1 LOC100128593 CCDC183 SNORA17B LCNL1 MIR4292 MAN1B1-AS1 C9orf163 MIR126 MAN1B1 DPP7 MIR3621 PTGDS UAP1L1 INPP5E TRAF2 LOC101930307 LCN6 C9orf142 FAM69B SNORA17A LCN8 FBXW5 NPDC1 SNAPC4 TMEM141 C9orf172 HSPC324 C9orf139 CCDC183-AS1 NOTCH1 MIR6722 SAPCD2 GRIN1 TMEM210 C8G LCN15 MIR4674 MAMDC4 MIR4479 CARD9 EGFL7 ENTPD2 LRRC26 SEC16A LCN12 SDCCAG3 SNHG7 RABL6
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR4673 DNLZ FAM69B LINC01451 SNORA17A LCN8 SNAPC4 TMEM141 C9orf172 PMPCA HSPC324 AGPAT2 CCDC183-AS1 NOTCH1 MIR6722 LCN10 PHPT1 EDF1 NALT1 LOC100128593 CCDC183 LCN15 MIR4674 MAMDC4 MIR4479 CARD9 EGFL7 SNORA17B MIR4292 C9orf163 SEC16A MIR126 GPSM1 INPP5E SDCCAG3 TRAF2 SNHG7 LCN6 RABL6
nsv615963	Chr.9:136386314 - 136474501 on Build GRCh38	Loss	INPP5E SDCCAG3 SNAPC4 PMPCA SEC16A
nsv951202	Chr.9:135770355 - 136558248 on Build GRCh38	Deletion	MIR4673 ESP33 DNLZ C9orf69 CAMSAP1 KCNT1 LHX3 DKFZP434A062 SNAPC4 PMPCA QSOX2 NACC2 NOTCH1 UBAC1 NALT1 MIR4674 CARD9 LOC101928722 C9orf163 SEC16A GPSM1 LOC107987142 CCDC187 INPP5E SDCCAG3 LOC105376323

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cell cycle
protein transport
regulation of cytokinesis
cell division
retrograde transport, endosome to plasma membrane

Function(s)

protein binding