Hs03725940_cn

• Gene Symbol: SDCCAG3
• Assay Reference Genome Location: Chr.9:136406925 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10807
• Gene Name: serologically defined colon cancer antigen 3
• Gene Aliases: NY-CO-3
• Location: Chr.9:136401922-136410602 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SDCCAG3	NM_001039707.1			NP_001034796.1
	NM_001039708.1			NP_001034797.1
	NM_006643.3			NP_006634.3
	XM_005266050.3			XP_005266107.1
	XM_005266051.3			XP_005266108.1
	XM_011518157.2			XP_011516459.1
	XM_017014218.1			XP_016869707.1
	XM_017014219.1			XP_016869708.1
	AF039688.1			AAC18037.1
	AK001296.1			BAA91607.1
	AY349357.1			AAQ56721.1
	BC014515.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv825174	Chr.9:136401929 - 136413005 on Build GRCh38	Gain	PMPCA SDCCAG3
nsv831760	Chr.9:136366430 - 136480358 on Build GRCh38	Loss	SEC16A CARD9 INPP5E PMPCA SNAPC4 SDCCAG3
nsv509333	Chr.9:136346749 - 136440541 on Build GRCh38	Insertion	GPSM1 SEC16A CARD9 INPP5E PMPCA SNAPC4 DNLZ SDCCAG3
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MAN1B1 SEC16A TMEM210 AGPAT2 MAMDC4 PMPCA TRAF2 LCNL1 DPP7 NPDC1 CARD9 PRR31 LOC100128593 FUT7 NALT1 LCN8 MIR4673 LCN12 EGFL7 NOTCH1 ABCA2 ENTPD2 FBXW5 C9orf172 CCDC183-AS1 LOC101930307 TMEM141 RABL6 SNORA17B C9orf139 EDF1 INPP5E MIR4674 LCN10 SNAPC4 C8G CCDC183 HSPC324 PTGDS SNORA17A MIR6722 C9orf142 LINC01451 C9orf163 MIR126 MIR3621 PHPT1 SDCCAG3 SNHG7 LCN6 LCN15 MIR4292 GRIN1 LRRC26 FAM69B SAPCD2 CLIC3 MIR4479 UAP1L1 DNLZ MAN1B1-AS1
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	SEC16A CCDC183 AGPAT2 MAMDC4 PMPCA TRAF2 HSPC324 SNORA17A MIR6722 LINC01451 C9orf163 MIR126 CARD9 LOC100128593 PHPT1 NALT1 SDCCAG3 LCN8 MIR4673 GPSM1 SNHG7 LCN6 EGFL7 NOTCH1 C9orf172 CCDC183-AS1 LCN15 TMEM141 RABL6 SNORA17B MIR4292 EDF1 FAM69B INPP5E MIR4479 MIR4674 LCN10 SNAPC4 DNLZ
nsv825173	Chr.9:135892081 - 136495763 on Build GRCh38	Gain	QSOX2 GPSM1 UBAC1 SEC16A NACC2 LOC105376323 ESP33 LOC107987142 NOTCH1 PMPCA LHX3 C9orf163 DKFZP434A062 CARD9 INPP5E C9orf69 CCDC187 SNAPC4 DNLZ CAMSAP1 SDCCAG3 LOC101928722
nsv615963	Chr.9:136386314 - 136474501 on Build GRCh38	Loss	SEC16A INPP5E PMPCA SNAPC4 SDCCAG3
nsv951202	Chr.9:135770355 - 136558248 on Build GRCh38	Deletion	QSOX2 SEC16A ESP33 PMPCA C9orf163 DKFZP434A062 CARD9 C9orf69 CCDC187 NALT1 CAMSAP1 SDCCAG3 MIR4673 GPSM1 UBAC1 NACC2 LOC105376323 LOC107987142 NOTCH1 LHX3 INPP5E MIR4674 SNAPC4 DNLZ LOC101928722 KCNT1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cell cycle
protein transport
regulation of cytokinesis
cell division
retrograde transport, endosome to plasma membrane

Function(s)

protein binding