Hs03774609_cn

• Gene Symbol: STIP1
• Assay Reference Genome Location: Chr.11:64189909 on build GRCh38
• Cytoband: 11q13.1

Target Gene Details

• Entrez Gene ID: 10963
• Gene Name: stress induced phosphoprotein 1
• Gene Aliases: HEL-S-94n, HOP, IEF-SSP-3521, P60, STI1, STI1L
• Location: Chr.11:64185272-64204548 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STIP1	NM_001282652.1			NP_001269581.1
	NM_001282653.1			NP_001269582.1
	NM_006819.2			NP_006810.1
	AK225736.1
	AK291555.1
	AK297319.1
	BC002987.1			AAH02987.1
	BC039299.1			AAH39299.1
	DA781468.1
	FJ224350.1
	M86752.1			AAA58682.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1159904	Chr.11:64150129 - 64279169 on Build GRCh38	Deletion	FKBP2 PLCB3 GPR137 STIP1 DNAJC4 TRPT1 NUDT22 BAD FERMT3 VEGFB LOC105369340 PPP1R14B MACROD1
nsv951010	Chr.11:63942829 - 64352128 on Build GRCh38	Deletion	NAA40 TRMT112 ESRRA STIP1 MIR7155 CCDC88B TRPT1 NUDT22 BAD PPP1R14B MACROD1 KCNK4 FKBP2 PLCB3 GPR137 TEX40 DNAJC4 OTUB1 FERMT3 COX8A VEGFB FLRT1 PRDX5 LOC105369340 KCNK4-TEX40
dgv1963n54	Chr.11:64174262 - 64329761 on Build GRCh38	Loss	KCNK4 FKBP2 PLCB3 GPR137 TEX40 TRMT112 ESRRA STIP1 DNAJC4 TRPT1 NUDT22 BAD FERMT3 VEGFB PRDX5 LOC105369340 PPP1R14B KCNK4-TEX40
nsv555187	Chr.11:64185649 - 64260416 on Build GRCh38	Loss	NUDT22 FKBP2 FERMT3 PLCB3 VEGFB LOC105369340 PPP1R14B STIP1 DNAJC4 TRPT1
nsv555184	Chr.11:64156974 - 64275525 on Build GRCh38	Loss	FKBP2 PLCB3 GPR137 STIP1 DNAJC4 TRPT1 NUDT22 BAD FERMT3 VEGFB LOC105369340 PPP1R14B MACROD1
nsv469961	Chr.11:64055468 - 64318495 on Build GRCh38	Loss	KCNK4 FKBP2 PLCB3 GPR137 TEX40 TRMT112 ESRRA STIP1 DNAJC4 TRPT1 NUDT22 BAD FERMT3 VEGFB FLRT1 PRDX5 LOC105369340 PPP1R14B KCNK4-TEX40 MACROD1
dgv15n68	Chr.11:64020230 - 64196060 on Build GRCh38	Loss	FLRT1 STIP1 MACROD1

More Information

Additional Information:

For this assay, SNP(s) [rs144935770] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

response to stress

Function(s)

protein binding
protein C-terminus binding
Hsp70 protein binding
poly(A) RNA binding
chaperone binding