Hs03776825_cn

• Gene Symbol: B4GALNT4
• Assay Reference Genome Location: Chr.11:370241 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 338707
• Gene Name: beta-1,4-N-acetyl-galactosaminyltransferase 4
• Gene Aliases: -
• Location: Chr.11:369773-382117 on Build GRCh38
• Assay Gene Location: Overlaps Intron 1 - Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
B4GALNT4	NM_178537.4			NP_848632.2
	XM_017017654.1			XP_016873143.1
	AB089939.1			BAD06471.1
	BC131528.1
	BF058197.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	IFITM3 LRRC56 MIR210 ANO9 IFITM5 RASSF7 PGGHG RNH1 LOC101059906 PTDSS2 PKP3 MIR210HG B4GALNT4 LOC143666 SIGIRR IFITM2 IRF7 PHRF1 LMNTD2 CDHR5 IFITM1 HRAS
nsv552776	Chr.11:366710 - 432436 on Build GRCh38	Loss	PKP3 B4GALNT4 ANO9 SIGIRR
esv28392	Chr.11:363975 - 403432 on Build GRCh38	Gain+Loss	PKP3 B4GALNT4
nsv951268	Chr.11:368601 - 503700 on Build GRCh38	Deletion	PKP3 B4GALNT4 ANO9 SIGIRR RNH1 PTDSS2
nsv552770	Chr.11:356090 - 444628 on Build GRCh38	Gain	PKP3 B4GALNT4 ANO9 SIGIRR
dgv1505n54	Chr.11:198510 - 470331 on Build GRCh38	Gain	IFITM3 BET1L ANO9 RIC8A IFITM5 PGGHG PTDSS2 PSMD13 PKP3 B4GALNT4 SIRT3 MIR6743 NLRP6 SIGIRR IFITM2 ODF3 IFITM1
nsv825676	Chr.11:366965 - 372662 on Build GRCh38	Gain	B4GALNT4
nsv1159790	Chr.11:340219 - 491334 on Build GRCh38	Deletion	PKP3 B4GALNT4 ANO9 SIGIRR PTDSS2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PNPLA2 RPLP2 LOC171391 LRRC56 PANO1 SCT RNH1 MIR210HG B4GALNT4 LOC143666 TSPAN4 CEND1 TALDO1 IRF7 AP2A2 CHID1 PDDC1 HRAS DEAF1 PIDD1 MIR210 ANO9 RASSF7 POLR2L LOC101059906 PTDSS2 TMEM80 PKP3 CD151 SNORA52 SLC25A22 EPS8L2 SIGIRR PHRF1 LMNTD2 CDHR5 CRACR2B DRD4
dgv1507n54	Chr.11:368778 - 382912 on Build GRCh38	Loss	B4GALNT4

More Information

Additional Information:

For this assay, SNP(s) [rs76560824] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Function(s)

acetylgalactosaminyltransferase activity
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity