Hs03798907_cn

• Gene Symbol: STX5
• Assay Reference Genome Location: Chr.11:62814076 on build GRCh38
• Cytoband: 11q12.3

Target Gene Details

• Entrez Gene ID: 6811
• Gene Name: syntaxin 5
• Gene Aliases: SED5, STX5A
• Location: Chr.11:62806860-62832091 on Build GRCh38
• Assay Gene Location: Within Intron 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STX5	NM_001244666.1			NP_001231595.1
	NM_003164.4			NP_003155.2
	XM_011545223.2			XP_011543525.1
	XM_011545224.2			XP_011543526.1
	AK296675.1
	AK313497.1
	BC002645.1			AAH02645.1
	BC012137.1			AAH12137.2
	BT019646.1			AAV38452.1
	BT019647.1			AAV38453.1
	BX537426.1			CAD97668.1
	U26648.1			AAC71078.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv508636	Chr.11:62779642 - 62876986 on Build GRCh38	Deletion	SNHG1 SNORD30 TMEM223 SNORD27 STX5 TMEM179B SNORD26 SNORD31 SNORD25 LOC105369332 SNORD29 MIR6748 MIR6514 SLC3A2 SNORD22 RNU2-2P SNORD28 WDR74 TAF6L NXF1

More Information

Additional Information:

For this assay, SNP(s) [rs114999345] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

SNARE protein

Gene Ontology Categories:

Process(es)

intracellular protein transport
ER to Golgi vesicle-mediated transport
vesicle fusion
early endosome to Golgi transport
retrograde transport, endosome to Golgi
positive regulation of protein catabolic process
COPII vesicle coating
vesicle docking
vesicle fusion with Golgi apparatus
Golgi disassembly
cell-cell adhesion
regulation of Golgi organization

Function(s)

SNARE binding
SNAP receptor activity
protein binding
protein N-terminus binding
cadherin binding involved in cell-cell adhesion