Hs03826336_cn

• Gene Symbol: GALNT9
• Assay Reference Genome Location: Chr.12:132279395 on build GRCh38
• Cytoband: 12q24.33

Target Gene Details

• Entrez Gene ID: 50614
• Gene Name: polypeptide N-acetylgalactosaminyltransferase 9
• Gene Aliases: GALNAC-T9, GALNACT9
• Location: Chr.12:132195829-132329364 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GALNT9	NM_001122636.1			NP_001116108.1
	XM_017019372.1			XP_016874861.1
	XM_017019373.1			XP_016874862.1
	XM_017019375.1			XP_016874864.1
	XM_017019376.1			XP_016874865.1
	AB040672.2			BAB13699.2
	AK055773.1
	BC157845.1
	BC171844.1
	BM925654.1
	DA206384.1

Target Gene Details

• Entrez Gene ID: 100130238
• Gene Name: uncharacterized LOC100130238
• Gene Aliases: -
• Location: Chr.12:132275391-132280900 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC100130238	NR_024563.1	4	2372

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv560966	Chr.12:132194518 - 132483313 on Build GRCh38	Gain	MUC8 LOC100130238 GALNT9 LOC101928416 LOC105370092
nsv952512	Chr.12:132192256 - 132711214 on Build GRCh38	Deletion	P2RX2 PGAM5 FBRSL1 PXMP2 LOC105370092 LRCOL1 MIR6763 POLE MUC8 LOC100996573 LOC100130238 GALNT9 LOC101928416
nsv1041402	Chr.12:132076412 - 132441297 on Build GRCh38	Gain	NOC4L DDX51 LOC100130238 GALNT9 LOC101928416 EP400NL LOC105370092 EP400
nsv826563	Chr.12:132125383 - 132622340 on Build GRCh38	Gain	P2RX2 FBRSL1 EP400NL LOC105370092 LRCOL1 MIR6763 MUC8 NOC4L LOC100996573 DDX51 LOC100130238 GALNT9 LOC101928416
dgv103n21	Chr.12:132117051 - 132442096 on Build GRCh38	Loss	NOC4L DDX51 LOC100130238 GALNT9 LOC101928416 EP400NL LOC105370092

More Information

Additional Information:

For this assay, SNP(s) [rs74397849,rs77611298] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

protein O-linked glycosylation
O-glycan processing

Function(s)

polypeptide N-acetylgalactosaminyltransferase activity
carbohydrate binding
metal ion binding