Hs03859095_cn

• Gene Symbol: ATP11A
• Assay Reference Genome Location: Chr.13:112716070 on build GRCh38
• Cytoband: 13q34

Target Gene Details

• Entrez Gene ID: 23250
• Gene Name: ATPase phospholipid transporting 11A
• Gene Aliases: ATPIH, ATPIS
• Location: Chr.13:112690034-112887168 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ATP11A	NM_015205.2			NP_056020.2
	NM_032189.3			NP_115565.3
	XM_005268299.4			XP_005268356.1
	XM_005268300.4			XP_005268357.1
	XM_005268301.4			XP_005268358.1
	XM_005268303.4			XP_005268360.1
	XM_005268305.4			XP_005268362.1
	XM_005268306.4			XP_005268363.1
	XM_011537480.2			XP_011535782.1
	XM_017020490.1			XP_016875979.1
	XM_017020491.1			XP_016875980.1
	XM_017020492.1			XP_016875981.1
	BE675783.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1037307	Chr.13:112658636 - 112717768 on Build GRCh38	Gain	ATP11AUN ATP11A
dgv3417n54	Chr.13:112504873 - 112744470 on Build GRCh38	Gain	ATP11AUN TUBGCP3 ATP11A
nsv518792	Chr.13:112679370 - 112785272 on Build GRCh38	Loss	ATP11AUN ATP11A-AS1 ATP11A
nsv1045238	Chr.13:112530283 - 112723969 on Build GRCh38	Gain	ATP11AUN TUBGCP3 ATP11A
nsv563229	Chr.13:112685447 - 112791908 on Build GRCh38	Loss	ATP11A-AS1 ATP11A
nsv1044644	Chr.13:112437023 - 113055517 on Build GRCh38	Gain	ATP11AUN MCF2L TUBGCP3 ATP11A-AS1 MCF2L-AS1 LOC107984590 ATP11A

More Information

Additional Information:

For this assay, SNP(s) [rs74115452] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

primary active transporter

Gene Ontology Categories:

Process(es)

phospholipid translocation

Function(s)

magnesium ion binding
phospholipid-translocating ATPase activity
protein binding
ATP binding