Genomic Map
Back To TopAssay Details
Target Gene Details
Entrez Gene ID: | 64788 |
Gene Name: | lipase maturation factor 1 |
Gene Aliases: |
C16orf26, HMFN1876, JFP11, TMEM112, TMEM112A |
Location: |
Chr.16:853632-981615 on Build GRCh38 |
Assay Gene Location: | Within Exon 15 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LMF1 | NM_022773.2 | NP_073610.2 | ||
| NR_033645.1 | ||||
| NR_033646.1 | ||||
| XM_006720928.2 | XP_006720991.1 | |||
| XM_006720929.3 | XP_006720992.1 | |||
| XM_011522614.2 | XP_011520916.1 | |||
| XM_011522615.1 | 8 | 1299 | XP_011520917.1 | |
| XM_011522617.2 | XP_011520919.1 | |||
| XM_017023575.1 | XP_016879064.1 | |||
| XM_017023576.1 | XP_016879065.1 | |||
| XM_017023577.1 | XP_016879066.1 | |||
| XM_017023578.1 | XP_016879067.1 | |||
| XM_017023579.1 | XP_016879068.1 | |||
| XM_017023580.1 | XP_016879069.1 | |||
| AB075873.1 | BAD38655.1 | |||
| AK022743.1 | BAB14218.1 | |||
| AK025955.1 | BAB15295.1 | |||
| AK093050.1 | ||||
| AK125201.1 | ||||
| AK225065.1 | ||||
| AK225406.1 | ||||
| BC010738.1 | AAH10738.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv571046 | Chr.16:828324 - 1202441 on Build GRCh38 | Gain |
 LMF1
SOX8
CACNA1H
LMF1-AS1
SSTR5
LOC107984876
SSTR5-AS1
C1QTNF8
|
| esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication |
MRPS34
KCTD5
MIR5587
SNORD60
PRSS29P
TBL3
TELO2
HBA2
CHTF18
TBC1D24
LUC7L
LINC00235
GNG13
ABCA3
MSRB1
NDUFB10
SNORA78
AXIN1
RAB26
GFER
TSR3
LOC105371184
CCDC154
PRR35
PGP
LOC107987233
FAM234A
HN1L
RNPS1
UBE2I
MEIOB
METRN
LOC652276
MIR4516
RHBDF1
IGFALS
TPSB2
SYNGR3
NUBP2
LOC729652
HS3ST6
NME4
SOX8
NOXO1
LOC105371045
HBQ1
WDR90
SNRNP25
SNORA64
C1QTNF8
MIR1225
HBM
MIR940
PRSS27
NTHL1
LOC105371049
LOC100287175
SNHG19
MAPK8IP3
PTX4
RPUSD1
MPG
LOC105371046
LINC00254
GNPTG
TMEM8A
SLC9A3R2
TPSG1
ATP6V0C
BRICD5
NPW
MIR3677
RPL23AP5
RAB40C
LOC107984876
LOC106660606
NME3
NARFL
CCNF
MIR662
RHOT2
TPSD1
SSTR5-AS1
TRAF7
MIR3177
PDIA2
CEMP1
RGS11
PIGQ
PKD1
TMEM204
LOC101929280
UNKL
BAIAP3
ECI1
STUB1
FLJ42627
MLST8
SSTR5
C16orf59
METTL26
FAM173A
NTN3
MCRIP2
RHBDL1
ERVK13-1
HBA1
E4F1
RPS2
MIR4717
HAGHL
HAGH
MRPL28
NPRL3
POLR3K
ARHGDIG
MIR6511B1
LOC105371038
ZNF598
CLCN7
CCDC78
LMF1
WDR24
HBZ
EME2
WFIKKN1
MIR3180-5
FBXL16
CASKIN1
LOC100134368
MSLN
JMJD8
ABCA17P
CRAMP1
DECR2
NHLRC4
SNORA10
PRR25
RPL3L
WASIR2
MIR3178
IFT140
MIR3176
RNF151
FAHD1
TSC2
LMF1-AS1
MIR6859-4
TPSAB1
LOC105371047
MIR6767
DNASE1L2
DDX11L10
CAPN15
SPSB3
CACNA1H
SNHG9
AMDHD2
C16orf91
PDPK1
RAB11FIP3
MIR6768
|
| esv3637586 | Chr.16:798995 - 892120 on Build GRCh38 | Loss |
GNG13
LMF1
PRR25
|
| esv3637595 | Chr.16:859147 - 890552 on Build GRCh38 | Loss |
LMF1
|
| nsv1046349 | Chr.16:819378 - 942590 on Build GRCh38 | Loss |
LMF1
LMF1-AS1
LOC107984876
|
| nsv952898 | Chr.16:495001 - 1132900 on Build GRCh38 | Deletion |
CCDC78
LMF1
WDR24
SOX8
WFIKKN1
MIR662
MIR5587
FBXL16
RHOT2
WDR90
MSLN
SSTR5-AS1
CHTF18
JMJD8
C1QTNF8
LINC00235
GNG13
NHLRC4
PIGQ
PRR25
LOC101929280
MIR3176
STUB1
LOC100287175
LOC105371184
LMF1-AS1
RPUSD1
SSTR5
PRR35
METTL26
FAM173A
LOC107987233
MCRIP2
RHBDL1
CAPN15
METRN
HAGHL
RAB40C
LOC107984876
LOC105371038
RAB11FIP3
NARFL
|
Back To TopMore Information
Additional Information:
For this assay, SNP(s) [rs79406502] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Gene Ontology Categories:
Back To Top