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See other MSLN CNV Assays ›
Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:764597 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03918455_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 NP_001170826.1
NM_005823.5 NP_005814.2
NM_013404.4 NP_037536.2
XM_005255034.4 XP_005255091.1
XM_011522348.2 XP_011520650.1
XM_017022853.1 XP_016878342.1
XM_017022854.1 XP_016878343.1
XM_017022855.1 XP_016878344.1
XM_017022856.1 XP_016878345.1
XM_017022857.1 XP_016878346.1
XM_017022858.1 XP_016878347.1
AL545401.3
AY743922.1 AAV87530.1
BC003512.1 AAH03512.1
BC009272.2 AAH09272.1
D49441.1 BAA08419.1
U40434.1 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571025 Chr.16:760143 - 768092 on Build GRCh38 Gain MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain PRR25 MIR662 RPUSD1 CHTF18 GNG13 MSLN
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication TPSAB1 LINC00235 HBM MSLN TRAF7 AXIN1 CASKIN1 IFT140 NDUFB10 SNORA78 LOC107987233 ZNF598 AMDHD2 ARHGDIG NTHL1 POLR3K TPSB2 NUBP2 TSR3 METTL26 RPL23AP5 SNORA10 LUC7L MPG RPUSD1 MIR3176 SNRNP25 JMJD8 GFER NARFL HN1L HBZ LOC105371045 PDIA2 CRAMP1 WDR24 MAPK8IP3 PRR25 TSC2 SNHG9 MIR3177 ERVK13-1 ECI1 RPS2 MIR3178 RGS11 DNASE1L2 TMEM204 TPSD1 MLST8 LOC729652 RHOT2 ABCA3 MRPS34 TMEM8A DDX11L10 RHBDF1 C16orf91 STUB1 NPW FAM234A MIR5587 NME3 ATP6V0C PKD1 MIR6767 SNHG19 TPSG1 LOC105371047 LINC00254 NOXO1 RAB40C METRN EME2 MCRIP2 MSRB1 WFIKKN1 TBL3 CAPN15 CLCN7 LOC106660606 SLC9A3R2 PRR35 NPRL3 LOC101929280 GNG13 E4F1 WDR90 CCDC154 RNF151 HS3ST6 IGFALS PDPK1 HBA2 UNKL SOX8 MIR6859-4 LOC652276 HBA1 RAB26 C16orf59 MEIOB TBC1D24 GNPTG DECR2 FAM173A CACNA1H MIR4516 LOC105371046 PGP CCNF NHLRC4 FLJ42627 LOC105371038 TELO2 UBE2I SPSB3 LOC100134368 RNPS1 FBXL16 MIR662 MIR6511B1 SNORD60 HBQ1 MIR1225 PRSS29P CCDC78 SSTR5-AS1 LMF1 SSTR5 MIR3180-5 FAHD1 CEMP1 RPL3L MIR4717 HAGHL HAGH MIR940 LOC105371184 MRPL28 PIGQ SYNGR3 LOC107984876 WASIR2 C1QTNF8 LMF1-AS1 CHTF18 LOC100287175 SNORA64 BRICD5 NTN3 MIR6768 LOC105371049 PRSS27 PTX4 MIR3677 ABCA17P RAB11FIP3 BAIAP3 KCTD5 RHBDL1 NME4
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MIR662 MSLN
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss WFIKKN1 CAPN15 WDR24 CCDC78 PRR25 PRR35 LOC101929280 LINC00235 GNG13 MSLN WDR90 HAGHL RHOT2 LOC105371184 PIGQ LOC107987233 STUB1 FAM173A CHTF18 NHLRC4 MIR5587 LOC105371038 LOC100287175 METTL26 FBXL16 MIR662 RPUSD1 RAB11FIP3 MIR3176 RAB40C JMJD8 METRN NARFL RHBDL1 MCRIP2
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss WFIKKN1 CAPN15 WDR24 CCDC78 PRR25 PRR35 LOC101929280 LINC00235 GNG13 MSLN WDR90 HAGHL RHOT2 LOC105371184 PIGQ LOC107987233 STUB1 FAM173A CHTF18 NHLRC4 MIR5587 LOC105371038 LOC100287175 METTL26 FBXL16 MIR662 RPUSD1 RAB11FIP3 MIR3176 RAB40C JMJD8 METRN NARFL RHBDL1 MCRIP2
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MIR662 MSLN
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion WFIKKN1 CAPN15 WDR24 CCDC78 SSTR5-AS1 PRR25 PRR35 LOC101929280 LINC00235 GNG13 MSLN LMF1 WDR90 SSTR5 HAGHL SOX8 RHOT2 LOC105371184 PIGQ LOC107987233 LOC107984876 STUB1 C1QTNF8 FAM173A LMF1-AS1 CHTF18 NHLRC4 MIR5587 LOC105371038 LOC100287175 METTL26 FBXL16 MIR662 RPUSD1 RAB11FIP3 MIR3176 RAB40C JMJD8 METRN NARFL RHBDL1 MCRIP2
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication WFIKKN1 WDR24 CCDC78 LOC101929280 GNG13 MSLN WDR90 HAGHL RHOT2 LOC105371184 PIGQ STUB1 FAM173A CHTF18 LOC105371038 LOC100287175 METTL26 FBXL16 MIR662 RPUSD1 RAB40C JMJD8 METRN NARFL RHBDL1 MCRIP2
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication WFIKKN1 CAPN15 WDR24 CCDC78 PRR25 PRR35 LOC101929280 LINC00235 GNG13 MSLN WDR90 HAGHL RHOT2 LOC105371184 PIGQ LOC107987233 STUB1 FAM173A CHTF18 NHLRC4 MIR5587 LOC105371038 LOC100287175 METTL26 FBXL16 MIR662 RPUSD1 RAB11FIP3 MIR3176 RAB40C JMJD8 METRN NARFL RHBDL1 MCRIP2
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss WDR24 CCDC78 STUB1 FAM173A CHTF18 GNG13 MSLN LOC105371038 LOC100287175 WDR90 HAGHL FBXL16 MIR662 RPUSD1 RHOT2 JMJD8 LOC105371184 METRN NARFL RHBDL1 MCRIP2
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss PRR25 MIR662 RPUSD1 CHTF18 GNG13 MSLN
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MIR662 MSLN

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More Information


Additional Information:

For this assay, SNP(s) [rs74001003] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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