Hs03918840_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88679065 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3			NP_840101.1
	BC041461.1			AAH41461.1
	BC107058.2			AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1
	BX640980.1	6	4171

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	PIEZO1 MVD LOC100289580 RNF166 CYBA LOC339059 SNAI3-AS1 MIR4722 CTU2 SNAI3
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	PIEZO1 MVD LOC100289580 RNF166 SNAI3-AS1 MIR4722 CTU2 SNAI3
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	PIEZO1 LOC100289580 RNF166 LOC339059 SNAI3-AS1 MIR4722 CTU2 SNAI3
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	ZC3H18 MVD RNF166 CYBA IL17C SNAI3-AS1 ZC3H18-AS1 SNAI3
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	ZC3H18 PIEZO1 MVD CYBA MIR4722 ZC3H18-AS1 SNAI3 ZNF469 ZFPM1 LOC100289580 RNF166 LOC339059 IL17C SNAI3-AS1 LOC107984862 CTU2 MIR5189
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	SNORD68 FANCA MIR4722 DPEP1 LOC101927793 LOC105371409 FAM157C CENPBD1 RNF166 GAS8-AS1 TUBB8P7 SPG7 PIEZO1 MVD SLC22A31 LOC100287036 APRT DBNDD1 LINC00304 SNAI3 AFG3L1P LOC101927817 LOC100289580 TUBB3 SNAI3-AS1 RPL13 LOC400558 MC1R CYBA GAS8 DEF8 CDT1 LOC105371419 ANKRD11 TRAPPC2L CHMP1A ZNF276 PRDM7 VPS9D1 LOC107987238 CDH15 LOC100129697 LOC107984817 LOC105371414 TCF25 SPATA33 SPATA2L URAHP GALNS SPIRE2 VPS9D1-AS1 CBFA2T3 CPNE7 ZNF778 LOC339059 IL17C CTU2 PABPN1L CDK10 ACSF3
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3-AS1 SNAI3

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding