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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:609430 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03919558_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4824n54 Chr.16:605686 - 670986 on Build GRCh38 Loss LOC105371038 RHOT2 LOC100287175 WFIKKN1 MCRIP2 WDR90 METTL26 RAB40C
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss PRR35 PIGQ MIR5587 MIR3176 NHLRC4 LOC107987233 RAB11FIP3 LINC00235 CAPN15 LOC101929280 RAB40C
nsv1040486 Chr.16:600788 - 627854 on Build GRCh38 Gain RAB40C
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication HBA2 FAHD1 C16orf91 PTX4 LOC107987233 DECR2 NPRL3 ATP6V0C FLJ42627 MIR940 METRN MIR3178 RAB26 MIR6768 LOC107984876 LINC00254 METTL26 ABCA3 EME2 LOC100134368 RHOT2 FAM173A FAM234A AMDHD2 SOX8 MSLN LOC105371184 RPUSD1 WFIKKN1 HS3ST6 TPSD1 HN1L NARFL BRICD5 TPSG1 LOC105371045 SSTR5-AS1 MIR3677 PDPK1 SLC9A3R2 PRR35 E4F1 LOC105371038 UBE2I RNF151 SNHG9 NTHL1 LUC7L MIR1225 CEMP1 CCDC154 ERVK13-1 HBM MRPL28 PRR25 C16orf59 GNPTG MSRB1 LOC105371047 TMEM8A TMEM204 ARHGDIG CACNA1H GNG13 HBA1 GFER ZNF598 MPG JMJD8 LMF1-AS1 RAB40C LOC100287175 DDX11L10 WDR24 SYNGR3 SNORA10 TPSB2 ECI1 SNORA78 WDR90 PKD1 STUB1 BAIAP3 NDUFB10 LOC105371046 SNORA64 SNORD60 MAPK8IP3 TBL3 IGFALS KCTD5 IFT140 MEIOB TPSAB1 TSC2 SSTR5 SNRNP25 MIR6767 LOC105371049 RHBDL1 SPSB3 RNPS1 MIR4717 PGP NOXO1 FBXL16 RPS2 UNKL MIR3177 NUBP2 PRSS27 CASKIN1 LMF1 MIR3180-5 ABCA17P NHLRC4 WASIR2 MIR6859-4 MIR4516 LOC652276 HBZ HAGH PIGQ AXIN1 HAGHL LOC729652 NPW CHTF18 TRAF7 TELO2 LOC101929280 NME3 MIR6511B1 NTN3 MIR5587 LOC106660606 MIR3176 PRSS29P DNASE1L2 C1QTNF8 CRAMP1 PDIA2 RPL23AP5 LINC00235 POLR3K CAPN15 TBC1D24 CLCN7 TSR3 RGS11 MCRIP2 NME4 CCDC78 MIR662 MLST8 RPL3L MRPS34 RAB11FIP3 RHBDF1 SNHG19 HBQ1 CCNF
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss PRR35 LOC105371038 NHLRC4 LOC107987233 METRN PIGQ HAGHL PRR25 CHTF18 METTL26 LOC101929280 RHBDL1 RHOT2 GNG13 MIR5587 MIR3176 FAM173A JMJD8 LINC00235 CAPN15 RAB40C FBXL16 MSLN LOC105371184 RPUSD1 LOC100287175 WFIKKN1 MCRIP2 CCDC78 WDR24 MIR662 NARFL WDR90 RAB11FIP3 STUB1
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss PRR35 LOC105371038 NHLRC4 LOC107987233 METRN PIGQ HAGHL PRR25 CHTF18 METTL26 LOC101929280 RHBDL1 RHOT2 GNG13 MIR5587 MIR3176 FAM173A JMJD8 LINC00235 CAPN15 RAB40C FBXL16 MSLN LOC105371184 RPUSD1 LOC100287175 WFIKKN1 MCRIP2 CCDC78 WDR24 MIR662 NARFL WDR90 RAB11FIP3 STUB1
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion PRR35 LMF1 LOC105371038 NHLRC4 LOC107987233 METRN PIGQ HAGHL SSTR5 LOC107984876 PRR25 CHTF18 METTL26 LOC101929280 RHBDL1 RHOT2 GNG13 MIR5587 MIR3176 C1QTNF8 FAM173A JMJD8 LMF1-AS1 LINC00235 CAPN15 RAB40C SOX8 FBXL16 MSLN LOC105371184 RPUSD1 LOC100287175 WFIKKN1 MCRIP2 CCDC78 WDR24 MIR662 NARFL WDR90 SSTR5-AS1 RAB11FIP3 STUB1
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss PRR35 LOC105371038 PIGQ LOC100287175 WFIKKN1 MCRIP2 NHLRC4 LOC107987233 WDR90 METTL26 LOC101929280 RAB40C
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain PRR35 PIGQ NHLRC4 LOC107987233 CAPN15 LOC101929280 RAB40C
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss LOC105371038 RHOT2 FAM173A JMJD8 RAB40C FBXL16 METRN LOC105371184 PIGQ LOC100287175 WFIKKN1 HAGHL MCRIP2 CCDC78 WDR24 NARFL WDR90 METTL26 STUB1 LOC101929280 RHBDL1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC105371038 METRN PIGQ HAGHL CHTF18 METTL26 LOC101929280 RHBDL1 RHOT2 GNG13 FAM173A JMJD8 RAB40C FBXL16 MSLN LOC105371184 RPUSD1 LOC100287175 WFIKKN1 MCRIP2 CCDC78 WDR24 MIR662 NARFL WDR90 STUB1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication PRR35 LOC105371038 NHLRC4 LOC107987233 METRN PIGQ HAGHL PRR25 CHTF18 METTL26 LOC101929280 RHBDL1 RHOT2 GNG13 MIR5587 MIR3176 FAM173A JMJD8 LINC00235 CAPN15 RAB40C FBXL16 MSLN LOC105371184 RPUSD1 LOC100287175 WFIKKN1 MCRIP2 CCDC78 WDR24 MIR662 NARFL WDR90 RAB11FIP3 STUB1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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