Hs03920310_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88681996 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3			NP_840101.1
	BC041461.1			AAH41461.1
	BC107058.2			AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	MIR4722 CTU2 SNAI3 LOC339059 LOC100289580 CYBA PIEZO1 MVD RNF166 SNAI3-AS1
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	MIR4722 CTU2 SNAI3 LOC100289580 PIEZO1 MVD RNF166 SNAI3-AS1
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	MIR4722 CTU2 SNAI3 LOC339059 LOC100289580 PIEZO1 RNF166 SNAI3-AS1
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	ZC3H18-AS1 SNAI3 IL17C CYBA MVD RNF166 SNAI3-AS1 ZC3H18
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	MIR4722 SNAI3 LOC339059 LOC100289580 CYBA RNF166 ZNF469 ZFPM1 MIR5189 CTU2 LOC107984862 ZC3H18-AS1 IL17C PIEZO1 MVD SNAI3-AS1 ZC3H18
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC101927793 APRT LOC339059 LOC100289580 SLC22A31 VPS9D1 LOC101927817 URAHP VPS9D1-AS1 DBNDD1 LOC107987238 MVD FAM157C LOC400558 MIR4722 ZNF276 TUBB8P7 SNAI3 CYBA GALNS CTU2 ANKRD11 TRAPPC2L CPNE7 CDK10 PIEZO1 AFG3L1P SPG7 PABPN1L PRDM7 DEF8 TCF25 SPATA2L RNF166 LOC107984817 CDH15 LINC00304 RPL13 CENPBD1 IL17C GAS8 LOC105371419 ZNF778 DPEP1 LOC100287036 LOC105371414 SNORD68 LOC100129697 LOC105371409 CDT1 MC1R SPATA33 ACSF3 CBFA2T3 CHMP1A GAS8-AS1 SPIRE2 TUBB3 SNAI3-AS1 FANCA
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3 SNAI3-AS1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding