Hs03922039_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88682578 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3			NP_840101.1
	BC041461.1			AAH41461.1
	BC107058.2			AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	SNAI3-AS1 LOC100289580 LOC339059 CTU2 CYBA SNAI3 RNF166 MIR4722 PIEZO1 MVD
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	SNAI3-AS1 LOC100289580 CTU2 SNAI3 RNF166 MIR4722 PIEZO1 MVD
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	SNAI3-AS1 LOC100289580 LOC339059 CTU2 SNAI3 RNF166 MIR4722 PIEZO1
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	SNAI3-AS1 IL17C ZC3H18 CYBA SNAI3 RNF166 ZC3H18-AS1 MVD
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	LOC100289580 LOC339059 IL17C ZC3H18 RNF166 ZFPM1 MIR4722 PIEZO1 ZNF469 MIR5189 SNAI3-AS1 LOC107984862 CTU2 CYBA SNAI3 ZC3H18-AS1 MVD
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC100129697 LOC100289580 IL17C SPG7 CPNE7 VPS9D1-AS1 CDK10 SNAI3 DEF8 ANKRD11 CDH15 ZNF276 GAS8-AS1 TCF25 LOC339059 AFG3L1P LOC107987238 LINC00304 LOC101927817 LOC101927793 PIEZO1 CBFA2T3 PABPN1L SNAI3-AS1 TUBB3 LOC105371414 ACSF3 CDT1 ZNF778 CHMP1A DPEP1 FANCA LOC107984817 LOC400558 VPS9D1 GAS8 GALNS SNORD68 RPL13 MC1R SPIRE2 FAM157C CYBA CENPBD1 APRT LOC105371409 TUBB8P7 SPATA2L MVD TRAPPC2L LOC100287036 RNF166 URAHP MIR4722 DBNDD1 SPATA33 CTU2 SLC22A31 LOC105371419 PRDM7
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3-AS1 SNAI3

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding