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See other MSLN CNV Assays ›
Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:761510 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03922856_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 NP_001170826.1
NM_005823.5 NP_005814.2
NM_013404.4 NP_037536.2
XM_005255034.4 XP_005255091.1
XM_011522348.2 XP_011520650.1
XM_017022857.1 XP_016878346.1
XM_017022858.1 XP_016878347.1
AL545401.3
AY743922.1 AAV87530.1
BC003512.1 AAH03512.1
BC009272.2 AAH09272.1
D49441.1 BAA08419.1
U40434.1 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571025 Chr.16:760143 - 768092 on Build GRCh38 Gain MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain MIR662 RPUSD1 CHTF18 GNG13 PRR25 MSLN
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR6511B1 RAB40C LOC105371049 MPG RPS2 HBQ1 WASIR2 IFT140 SSTR5-AS1 ARHGDIG POLR3K MIR3178 ERVK13-1 LOC105371045 MSRB1 RNPS1 NHLRC4 LOC107987233 MLST8 TBL3 BRICD5 KCTD5 CEMP1 CRAMP1 EME2 RHBDF1 MIR3180-5 HBA1 HAGHL FAM234A TPSAB1 MIR6768 MIR1225 LOC100134368 HAGH ABCA17P PRR35 TRAF7 RHBDL1 RGS11 HBZ CLCN7 MAPK8IP3 PRSS29P HBM ECI1 MIR4516 TMEM204 MCRIP2 TBC1D24 MIR940 ABCA3 SOX8 CAPN15 NTN3 RPL3L GNG13 MRPL28 UBE2I STUB1 LOC106660606 TSC2 LOC105371046 RNF151 WFIKKN1 METTL26 TSR3 LOC105371038 JMJD8 C16orf59 NUBP2 GFER LOC652276 PTX4 MEIOB METRN SPSB3 UNKL LMF1 DECR2 MSLN SNHG19 BAIAP3 NPRL3 TPSG1 FLJ42627 MIR662 NPW LOC100287175 CCDC78 TELO2 MIR6767 ZNF598 NOXO1 LUC7L WDR90 PDPK1 PDIA2 SNORA64 CCNF SNORA78 CCDC154 TPSB2 MIR6859-4 LMF1-AS1 FBXL16 HS3ST6 LOC101929280 LOC729652 MRPS34 LINC00254 RPL23AP5 CASKIN1 PKD1 RHOT2 C1QTNF8 GNPTG C16orf91 FAM173A TPSD1 MIR4717 SLC9A3R2 DDX11L10 PIGQ LOC107984876 AXIN1 MIR3677 WDR24 RAB11FIP3 LOC105371184 RAB26 SNRNP25 SNHG9 PRSS27 AMDHD2 CHTF18 SNORD60 DNASE1L2 PRR25 SNORA10 NTHL1 SSTR5 E4F1 LOC105371047 PGP MIR3176 NME3 NARFL MIR5587 NDUFB10 HN1L FAHD1 IGFALS RPUSD1 CACNA1H LINC00235 SYNGR3 HBA2 TMEM8A ATP6V0C NME4 MIR3177
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MIR662 MSLN
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss MIR662 WDR24 RAB40C LOC100287175 CCDC78 RAB11FIP3 LOC105371184 MCRIP2 CAPN15 CHTF18 WDR90 GNG13 PRR25 STUB1 NHLRC4 WFIKKN1 METTL26 LOC107987233 LOC105371038 MIR3176 JMJD8 FBXL16 NARFL LOC101929280 MIR5587 RPUSD1 HAGHL RHOT2 METRN PRR35 FAM173A LINC00235 MSLN RHBDL1 PIGQ
nsv457311 Chr.16:681725 - 761746 on Build GRCh38 Loss HAGHL WDR24 CCDC78 METRN JMJD8 FBXL16 FAM173A NARFL STUB1 MSLN
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss MIR662 WDR24 RAB40C LOC100287175 CCDC78 RAB11FIP3 LOC105371184 MCRIP2 CAPN15 CHTF18 WDR90 GNG13 PRR25 STUB1 NHLRC4 WFIKKN1 METTL26 LOC107987233 LOC105371038 MIR3176 JMJD8 FBXL16 NARFL LOC101929280 MIR5587 RPUSD1 HAGHL RHOT2 METRN PRR35 FAM173A LINC00235 MSLN RHBDL1 PIGQ
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MIR662 MSLN
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC107984876 MIR662 WDR24 RAB40C LOC100287175 CCDC78 RAB11FIP3 LOC105371184 MCRIP2 SOX8 CAPN15 SSTR5-AS1 CHTF18 WDR90 GNG13 PRR25 STUB1 SSTR5 NHLRC4 WFIKKN1 LMF1-AS1 METTL26 LOC107987233 LOC105371038 MIR3176 JMJD8 FBXL16 NARFL LOC101929280 MIR5587 RPUSD1 HAGHL RHOT2 C1QTNF8 METRN PRR35 FAM173A LINC00235 LMF1 MSLN RHBDL1 PIGQ
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication MIR662 WDR24 RAB40C LOC100287175 CCDC78 LOC105371184 MCRIP2 CHTF18 WDR90 GNG13 STUB1 WFIKKN1 METTL26 LOC105371038 JMJD8 FBXL16 NARFL LOC101929280 RPUSD1 HAGHL RHOT2 METRN FAM173A MSLN RHBDL1 PIGQ
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication MIR662 WDR24 RAB40C LOC100287175 CCDC78 RAB11FIP3 LOC105371184 MCRIP2 CAPN15 CHTF18 WDR90 GNG13 PRR25 STUB1 NHLRC4 WFIKKN1 METTL26 LOC107987233 LOC105371038 MIR3176 JMJD8 FBXL16 NARFL LOC101929280 MIR5587 RPUSD1 HAGHL RHOT2 METRN PRR35 FAM173A LINC00235 MSLN RHBDL1 PIGQ
dgv4825n54 Chr.16:661905 - 761746 on Build GRCh38 Loss WDR24 CCDC78 LOC105371184 JMJD8 FBXL16 NARFL WDR90 HAGHL RHOT2 METRN FAM173A STUB1 MSLN RHBDL1
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss MIR662 WDR24 LOC105371038 LOC100287175 CCDC78 LOC105371184 MCRIP2 JMJD8 FBXL16 NARFL RPUSD1 CHTF18 WDR90 HAGHL RHOT2 GNG13 METRN FAM173A STUB1 MSLN RHBDL1
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss MIR662 RPUSD1 CHTF18 GNG13 PRR25 MSLN
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MIR662 MSLN

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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