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See other LMF1 CNV Assays ›
Gene Symbol
LMF1
Assay Reference Genome
Location

Chr.16:921661 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03923350_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 64788

Gene Name:

 lipase maturation factor 1

Gene Aliases:

 C16orf26, HMFN1876, JFP11, TMEM112, TMEM112A

Location:

 Chr.16:853632-981615 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LMF1 NM_022773.2 NP_073610.2
NR_033645.1
NR_033646.1
XM_006720928.2 XP_006720991.1
XM_006720929.3 XP_006720992.1
XM_011522614.2 XP_011520916.1
XM_011522615.1 XP_011520917.1
XM_011522617.2 XP_011520919.1
XM_011522618.2 XP_011520920.1
XM_017023575.1 XP_016879064.1
XM_017023576.1 XP_016879065.1
XM_017023577.1 XP_016879066.1
XM_017023578.1 XP_016879067.1
XM_017023579.1 XP_016879068.1
XM_017023580.1 XP_016879069.1
XM_017023581.1 XP_016879070.1
AB075873.1 BAD38655.1
AK022743.1 BAB14218.1
AK025955.1 BAB15295.1
AK093050.1
AK125201.1
AK225065.1
AK225406.1
AK294329.1
AK294932.1
BC010738.1 AAH10738.2
DA200865.1

Target Gene Details

Entrez Gene ID:

 101929387

Gene Name:

 LMF1 antisense RNA 1

Gene Aliases:

 LA16c-366D3.1

Location:

 Chr.16:921033-934524 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LMF1-AS1 NR_110945.1
NR_110946.1
BM547968.1
BX397433.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571046 Chr.16:828324 - 1202441 on Build GRCh38 Gain SSTR5-AS1 CACNA1H LMF1-AS1 SSTR5 SOX8 LMF1 C1QTNF8 LOC107984876
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR4717 NOXO1 CCDC154 GNPTG RNF151 MIR3177 METTL26 SNHG9 PRR25 TELO2 LOC105371184 NME4 PRSS29P NDUFB10 SNRNP25 DNASE1L2 SOX8 ARHGDIG CASKIN1 SLC9A3R2 SYNGR3 FAM173A WFIKKN1 CHTF18 MIR662 E4F1 MIR4516 HBM TPSG1 PKD1 NTHL1 IFT140 HS3ST6 MIR3180-5 LOC105371049 RNPS1 SSTR5-AS1 AXIN1 NUBP2 MIR3176 CRAMP1 LMF1 PRR35 BRICD5 LOC729652 HBZ RPL23AP5 FAHD1 LOC106660606 TSC2 NHLRC4 RHBDL1 LOC107984876 ATP6V0C LOC100287175 TMEM204 LOC105371045 METRN RPL3L IGFALS RGS11 NARFL FLJ42627 MIR940 CCDC78 NTN3 RHOT2 DDX11L10 LOC652276 LOC105371047 TMEM8A MAPK8IP3 MIR3178 WASIR2 JMJD8 MLST8 MIR6767 EME2 FBXL16 NPW TPSD1 ERVK13-1 MPG MIR6511B1 MSLN HBA1 GNG13 NPRL3 NME3 MIR6859-4 FAM234A PDPK1 MIR6768 CLCN7 RAB40C MSRB1 GFER LINC00235 SNORD60 RPUSD1 PTX4 CEMP1 UBE2I SNHG19 RAB11FIP3 ABCA17P C16orf91 TPSB2 CCNF ZNF598 SNORA64 ABCA3 ECI1 MIR3677 BAIAP3 TSR3 MRPL28 STUB1 LOC105371046 SSTR5 CAPN15 HBQ1 TBC1D24 HBA2 LOC105371038 POLR3K AMDHD2 MIR5587 HAGH PDIA2 KCTD5 HAGHL LOC100134368 MEIOB MRPS34 DECR2 PIGQ TPSAB1 C1QTNF8 LOC107987233 CACNA1H RAB26 SNORA78 LOC101929280 WDR24 RHBDF1 PRSS27 WDR90 LUC7L HN1L PGP UNKL LMF1-AS1 TRAF7 LINC00254 RPS2 SPSB3 SNORA10 MCRIP2 TBL3 C16orf59 MIR1225
nsv471066 Chr.16:893361 - 1482836 on Build GRCh38 Loss PRSS29P TSR3 CACNA1H CCDC154 UBE2I SSTR5 SOX8 GNPTG TPSD1 LOC107984876 LOC105371045 SSTR5-AS1 C16orf91 UNKL TPSB2 LMF1-AS1 LMF1 TPSAB1 C1QTNF8 CLCN7 BAIAP3 TPSG1
nsv1705 Chr.16:890581 - 923385 on Build GRCh38 Insertion LMF1-AS1 LMF1 LOC107984876
nsv1046349 Chr.16:819378 - 942590 on Build GRCh38 Loss LMF1-AS1 LMF1 LOC107984876
nsv1042868 Chr.16:881686 - 966057 on Build GRCh38 Loss LMF1-AS1 LMF1 LOC107984876
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion RHOT2 STUB1 SSTR5 CAPN15 JMJD8 LOC105371038 MIR5587 METTL26 FBXL16 HAGHL SSTR5-AS1 MSLN GNG13 PRR25 MIR3176 PIGQ LMF1 PRR35 C1QTNF8 RAB40C LOC105371184 LINC00235 LOC107987233 RPUSD1 SOX8 LOC101929280 FAM173A WDR24 NHLRC4 WFIKKN1 RAB11FIP3 CHTF18 RHBDL1 LOC107984876 WDR90 LOC100287175 METRN LMF1-AS1 MIR662 MCRIP2 NARFL CCDC78
nsv457316 Chr.16:884180 - 933163 on Build GRCh38 Loss LMF1-AS1 LMF1 LOC107984876
esv3637598 Chr.16:921297 - 922718 on Build GRCh38 Loss LMF1-AS1 LMF1

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More Information


Additional Information:

For this assay, SNP(s) [rs73499217,rs78163818] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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