Hs03925997_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88685028 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3			NP_840101.1
	BC041461.1			AAH41461.1
	BC107058.2			AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	LOC339059 PIEZO1 LOC100289580 CTU2 CYBA RNF166 MIR4722 SNAI3 SNAI3-AS1 MVD
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	LOC339059 PIEZO1 GALNS LOC107987238 LOC100289580 CDT1 CTU2 RNF166 MIR4722 SNAI3 SNAI3-AS1 APRT
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	PIEZO1 LOC100289580 CTU2 RNF166 MIR4722 SNAI3 SNAI3-AS1 MVD
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	LOC339059 PIEZO1 LOC100289580 CTU2 RNF166 MIR4722 SNAI3 SNAI3-AS1
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	ZC3H18-AS1 ZC3H18 CYBA RNF166 SNAI3 IL17C SNAI3-AS1 MVD
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	LOC339059 ZFPM1 CTU2 CYBA MIR5189 PIEZO1 ZC3H18-AS1 LOC100289580 ZC3H18 RNF166 MIR4722 SNAI3 IL17C SNAI3-AS1 LOC107984862 MVD ZNF469
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC339059 LOC107984817 CHMP1A TRAPPC2L CDK10 LOC105371419 SPATA2L TCF25 ACSF3 LINC00304 LOC107987238 FAM157C CBFA2T3 MIR4722 CENPBD1 PRDM7 SLC22A31 FANCA SPATA33 CYBA VPS9D1 GAS8-AS1 CDH15 TUBB8P7 MC1R GALNS DPEP1 LOC101927793 LOC100289580 PABPN1L RNF166 SPG7 LOC101927817 IL17C LOC105371409 ANKRD11 TUBB3 SPIRE2 CDT1 CTU2 SNORD68 ZNF778 CPNE7 DBNDD1 LOC100287036 VPS9D1-AS1 LOC100129697 PIEZO1 DEF8 SNAI3 RPL13 LOC105371414 AFG3L1P URAHP GAS8 SNAI3-AS1 APRT ZNF276 MVD LOC400558
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3 SNAI3-AS1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding