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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:589747 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03926493_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 2 - Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
BG696681.1
BG715678.1
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss MIR5587 RAB11FIP3 NHLRC4 PIGQ CAPN15 LINC00235 PRR35 RAB40C LOC107987233 LOC101929280 MIR3176
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication RAB11FIP3 MIR3180-5 LOC107984876 LOC101929280 RHBDF1 SYNGR3 NTN3 SNORA10 PGP MLST8 IGFALS HS3ST6 STUB1 RNPS1 NME4 PRSS27 HBA2 LMF1-AS1 RAB26 ZNF598 TPSAB1 SNHG9 FLJ42627 MRPS34 RPL3L DECR2 AXIN1 NME3 CCNF ERVK13-1 CASKIN1 EME2 HBZ WDR24 NHLRC4 MIR3178 MIR940 RGS11 E4F1 WDR90 SNORA64 LOC105371049 PTX4 MAPK8IP3 UNKL LINC00235 BAIAP3 RAB40C TBC1D24 NPW MIR6767 C1QTNF8 PIGQ CAPN15 NOXO1 MIR662 SNHG19 MIR3176 HBA1 WASIR2 RPUSD1 AMDHD2 SPSB3 NUBP2 TSR3 NPRL3 FAHD1 SOX8 CEMP1 LOC652276 MIR6859-4 PDIA2 MIR6768 FAM234A ATP6V0C LINC00254 POLR3K SNORA78 TRAF7 LOC105371038 KCTD5 METRN DDX11L10 MRPL28 LOC729652 IFT140 GNG13 LOC105371045 HN1L FAM173A LOC107987233 NDUFB10 CLCN7 HAGH RHBDL1 TMEM8A CRAMP1 MPG MEIOB MIR5587 LOC105371184 SLC9A3R2 SSTR5 CCDC154 MIR4516 LUC7L LOC105371047 MIR1225 GFER JMJD8 BRICD5 MSLN HBQ1 MIR3677 TPSB2 CCDC78 MSRB1 SNORD60 TBL3 TELO2 PRR25 TPSD1 CACNA1H RHOT2 PDPK1 ABCA3 RPS2 CHTF18 UBE2I RPL23AP5 TSC2 RNF151 MIR3177 PRSS29P LOC100287175 LOC105371046 ECI1 MIR4717 LMF1 TPSG1 LOC106660606 LOC100134368 PKD1 GNPTG NTHL1 FBXL16 HBM WFIKKN1 TMEM204 ARHGDIG PRR35 MIR6511B1 C16orf91 ABCA17P C16orf59 DNASE1L2 METTL26 HAGHL NARFL SSTR5-AS1 MCRIP2 SNRNP25
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss CCDC78 RAB11FIP3 WDR24 PRR25 NHLRC4 RHOT2 LOC105371038 LOC101929280 METRN WDR90 CHTF18 LINC00235 GNG13 LOC100287175 FAM173A RAB40C LOC107987233 RHBDL1 STUB1 MIR5587 FBXL16 LOC105371184 PIGQ CAPN15 WFIKKN1 MIR662 PRR35 MIR3176 RPUSD1 METTL26 JMJD8 HAGHL MSLN NARFL MCRIP2
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss CCDC78 RAB11FIP3 WDR24 PRR25 NHLRC4 RHOT2 LOC105371038 LOC101929280 METRN WDR90 CHTF18 LINC00235 GNG13 LOC100287175 FAM173A RAB40C LOC107987233 RHBDL1 STUB1 MIR5587 FBXL16 LOC105371184 PIGQ CAPN15 WFIKKN1 MIR662 PRR35 MIR3176 RPUSD1 METTL26 JMJD8 HAGHL MSLN NARFL MCRIP2
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion CCDC78 RAB11FIP3 WDR24 PRR25 NHLRC4 RHOT2 LOC107984876 LOC105371038 LOC101929280 METRN WDR90 CHTF18 LINC00235 GNG13 LOC100287175 FAM173A RAB40C LOC107987233 LMF1 C1QTNF8 RHBDL1 STUB1 MIR5587 FBXL16 LOC105371184 PIGQ SSTR5 CAPN15 WFIKKN1 MIR662 PRR35 LMF1-AS1 MIR3176 RPUSD1 METTL26 JMJD8 HAGHL MSLN NARFL SSTR5-AS1 MCRIP2 SOX8
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss NHLRC4 PIGQ WFIKKN1 LOC100287175 PRR35 METTL26 RAB40C LOC107987233 LOC105371038 LOC101929280 MCRIP2 WDR90
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain NHLRC4 PIGQ CAPN15 PRR35 RAB40C LOC107987233 LOC101929280
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss STUB1 CCDC78 FBXL16 LOC105371184 WDR24 RHOT2 PIGQ WFIKKN1 LOC105371038 LOC101929280 METRN WDR90 LOC100287175 METTL26 JMJD8 HAGHL FAM173A RAB40C NARFL MCRIP2 RHBDL1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication CCDC78 WDR24 RHOT2 LOC105371038 LOC101929280 METRN WDR90 CHTF18 GNG13 LOC100287175 FAM173A RAB40C RHBDL1 STUB1 FBXL16 LOC105371184 PIGQ WFIKKN1 MIR662 RPUSD1 METTL26 JMJD8 HAGHL MSLN NARFL MCRIP2
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication CCDC78 RAB11FIP3 WDR24 PRR25 NHLRC4 RHOT2 LOC105371038 LOC101929280 METRN WDR90 CHTF18 LINC00235 GNG13 LOC100287175 FAM173A RAB40C LOC107987233 RHBDL1 STUB1 MIR5587 FBXL16 LOC105371184 PIGQ CAPN15 WFIKKN1 MIR662 PRR35 MIR3176 RPUSD1 METTL26 JMJD8 HAGHL MSLN NARFL MCRIP2

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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