Hs03926879_cn

• Gene Symbol: CCDC154
• Assay Reference Genome Location: Chr.16:1436012 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 645811
• Gene Name: coiled-coil domain containing 154
• Gene Aliases: C16orf29
• Location: Chr.16:1434388-1444489 on Build GRCh38
• Assay Gene Location: Within Exon 14

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CCDC154	NM_001143980.1	14	1729	NP_001137452.1
	JN935901.1	13	1562

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv571161	Chr.16:1431019 - 1457987 on Build GRCh38	Gain	CLCN7 LOC105371045 CCDC154
esv2762143	Chr.16:1270592 - 1519404 on Build GRCh38	Gain	PTX4 C16orf91 IFT140 TSR3 CLCN7 GNPTG BAIAP3 LOC105371045 UBE2I TELO2 CCDC154 UNKL
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	PRR35 C16orf91 HS3ST6 KCTD5 BAIAP3 MIR3176 LOC101929280 C16orf59 MIR6511B1 SNRNP25 LOC105371184 RHOT2 FAM234A NME3 SNHG9 FAM173A SLC9A3R2 RNPS1 MSRB1 TPSD1 MIR4717 TPSAB1 TPSG1 HAGHL MIR940 CCDC154 PDIA2 NUBP2 WDR24 TMEM204 NPW MIR3180-5 RAB26 MRPL28 MIR3677 LOC107984876 EME2 PTX4 ERVK13-1 SYNGR3 RHBDF1 CAPN15 CCNF MCRIP2 METRN DNASE1L2 UBE2I ABCA17P SNORD60 FLJ42627 AXIN1 IGFALS TSC2 E4F1 NTN3 LINC00254 CRAMP1 NARFL PKD1 MIR6767 MIR662 SOX8 AMDHD2 TELO2 LOC105371049 NTHL1 ZNF598 GNG13 NPRL3 TPSB2 ECI1 SNORA64 MSLN PRSS27 TBC1D24 PDPK1 BRICD5 MIR3178 WASIR2 LOC729652 TSR3 JMJD8 HBZ SSTR5-AS1 CHTF18 DECR2 LOC652276 LINC00235 LOC100134368 WDR90 LMF1-AS1 MIR4516 FBXL16 SNHG19 SNORA10 SSTR5 DDX11L10 CASKIN1 LOC105371038 MLST8 ARHGDIG LOC105371046 LOC100287175 C1QTNF8 RAB11FIP3 NDUFB10 LOC106660606 POLR3K RPL23AP5 PGP CLCN7 CCDC78 ABCA3 PRR25 RPUSD1 IFT140 RGS11 TBL3 STUB1 LOC105371045 HBQ1 GFER MIR1225 RAB40C MIR3177 HBM SNORA78 HBA1 GNPTG HAGH NHLRC4 MPG LMF1 CEMP1 LUC7L RHBDL1 RPS2 MIR5587 NOXO1 WFIKKN1 HBA2 MEIOB HN1L FAHD1 LOC107987233 MIR6859-4 NME4 ATP6V0C MRPS34 MIR6768 METTL26 TMEM8A PRSS29P RNF151 SPSB3 UNKL LOC105371047 TRAF7 PIGQ MAPK8IP3 CACNA1H RPL3L
nsv471066	Chr.16:893361 - 1482836 on Build GRCh38	Loss	C16orf91 CLCN7 LMF1-AS1 GNPTG BAIAP3 LMF1 PRSS29P TPSB2 SSTR5 UNKL LOC107984876 TSR3 SSTR5-AS1 TPSD1 LOC105371045 C1QTNF8 TPSAB1 CACNA1H SOX8 TPSG1 UBE2I CCDC154
nsv952899	Chr.16:1142501 - 1535899 on Build GRCh38	Deletion	C16orf91 CLCN7 GNPTG BAIAP3 TMEM204 PRSS29P TPSB2 UNKL LOC105371047 PTX4 IFT140 TSR3 TPSD1 LOC105371045 TPSAB1 CACNA1H TPSG1 UBE2I TELO2 CCDC154
nsv817713	Chr.16:1426464 - 1460566 on Build GRCh38	Loss	CLCN7 LOC105371045 CCDC154
nsv819844	Chr.16:1401518 - 1457987 on Build GRCh38	Gain	C16orf91 CLCN7 LOC105371045 CCDC154 UNKL

More Information

Additional Information:

For this assay, SNP(s) [rs111957036] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation