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See other LMF1 CNV Assays ›
Gene Symbol
LMF1
Assay Reference Genome
Location

Chr.16:923168 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03927756_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 64788

Gene Name:

 lipase maturation factor 1

Gene Aliases:

 C16orf26, HMFN1876, JFP11, TMEM112, TMEM112A

Location:

 Chr.16:853632-981615 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LMF1 NM_022773.2 NP_073610.2
NR_033645.1
NR_033646.1
XM_006720928.2 XP_006720991.1
XM_006720929.3 XP_006720992.1
XM_011522614.2 XP_011520916.1
XM_011522615.1 XP_011520917.1
XM_011522617.2 XP_011520919.1
XM_011522618.2 XP_011520920.1
XM_017023575.1 XP_016879064.1
XM_017023576.1 XP_016879065.1
XM_017023577.1 XP_016879066.1
XM_017023578.1 XP_016879067.1
XM_017023579.1 XP_016879068.1
XM_017023580.1 XP_016879069.1
XM_017023581.1 XP_016879070.1
AB075873.1 BAD38655.1
AK022743.1 BAB14218.1
AK025955.1 BAB15295.1
AK093050.1
AK125201.1
AK225065.1
AK225406.1
AK294329.1
AK294932.1
BC010738.1 AAH10738.2
DA200865.1

Target Gene Details

Entrez Gene ID:

 101929387

Gene Name:

 LMF1 antisense RNA 1

Gene Aliases:

 LA16c-366D3.1

Location:

 Chr.16:921033-934524 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LMF1-AS1 NR_110945.1
NR_110946.1
BM547968.1
BX397433.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571046 Chr.16:828324 - 1202441 on Build GRCh38 Gain C1QTNF8 SSTR5 CACNA1H LMF1-AS1 LMF1 SOX8 SSTR5-AS1 LOC107984876
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication WDR24 MRPS34 LUC7L C1QTNF8 E4F1 TMEM8A IGFALS ABCA17P PGP TSC2 NME4 FAM234A LOC107987233 CCDC154 BRICD5 UBE2I RHBDL1 SNHG19 WDR90 HBM TBL3 LOC105371045 NARFL PRSS29P PTX4 MLST8 LOC105371046 HN1L CACNA1H HS3ST6 LOC105371038 SSTR5-AS1 MIR3178 RPL3L MIR940 MCRIP2 DDX11L10 KCTD5 TSR3 MIR6767 UNKL ATP6V0C SSTR5 AMDHD2 NPW MIR5587 PKD1 CASKIN1 MEIOB NME3 NOXO1 LOC107984876 PRSS27 WASIR2 TMEM204 DECR2 PRR35 LOC729652 WFIKKN1 LINC00235 MPG ABCA3 C16orf91 NDUFB10 MSLN TPSB2 SPSB3 RPUSD1 HBA1 PRR25 FAM173A LOC105371184 PDPK1 C16orf59 HBZ METTL26 LOC652276 TPSAB1 LMF1-AS1 RPL23AP5 MIR6511B1 ECI1 MIR1225 RHBDF1 LOC105371049 MIR3177 SLC9A3R2 TPSG1 CHTF18 RGS11 GFER RAB26 RNPS1 METRN PIGQ MAPK8IP3 MIR662 LOC101929280 SNRNP25 SOX8 TELO2 RHOT2 SNORA78 MIR4717 RNF151 MSRB1 PDIA2 GNG13 AXIN1 CCDC78 STUB1 CCNF FBXL16 CAPN15 GNPTG BAIAP3 NPRL3 LOC100287175 LOC100134368 HBQ1 ARHGDIG RPS2 MIR3677 SNORA10 LINC00254 CLCN7 HAGHL MRPL28 FLJ42627 NUBP2 NHLRC4 ERVK13-1 MIR3176 HBA2 NTHL1 MIR6859-4 EME2 MIR4516 TRAF7 MIR3180-5 SNORA64 POLR3K CRAMP1 FAHD1 CEMP1 LMF1 TBC1D24 IFT140 DNASE1L2 RAB40C RAB11FIP3 LOC105371047 SNHG9 TPSD1 ZNF598 NTN3 LOC106660606 MIR6768 SYNGR3 SNORD60 JMJD8 HAGH
esv2750259 Chr.16:922499 - 923165 on Build GRCh38 Deletion LMF1-AS1 LMF1
esv2750261 Chr.16:922993 - 923188 on Build GRCh38 Deletion LMF1-AS1 LMF1
nsv471066 Chr.16:893361 - 1482836 on Build GRCh38 Loss CLCN7 C1QTNF8 PRSS29P TPSG1 TPSB2 CACNA1H LMF1 SSTR5-AS1 GNPTG BAIAP3 LOC107984876 TSR3 TPSD1 UNKL CCDC154 UBE2I SSTR5 TPSAB1 LMF1-AS1 SOX8 C16orf91 LOC105371045
nsv1705 Chr.16:890581 - 923385 on Build GRCh38 Insertion LMF1-AS1 LMF1 LOC107984876
nsv1046349 Chr.16:819378 - 942590 on Build GRCh38 Loss LMF1-AS1 LMF1 LOC107984876
nsv1042868 Chr.16:881686 - 966057 on Build GRCh38 Loss LMF1-AS1 LMF1 LOC107984876
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion WDR24 C1QTNF8 HAGHL CHTF18 NHLRC4 MIR3176 LOC107984876 PRR35 METRN PIGQ MIR662 LOC107987233 LOC101929280 WFIKKN1 RHBDL1 WDR90 LINC00235 SOX8 RHOT2 NARFL MSLN GNG13 CCDC78 STUB1 RPUSD1 FBXL16 LMF1 CAPN15 LOC105371038 SSTR5-AS1 PRR25 FAM173A LOC105371184 RAB40C RAB11FIP3 MCRIP2 LOC100287175 METTL26 SSTR5 LMF1-AS1 JMJD8 MIR5587
nsv457316 Chr.16:884180 - 933163 on Build GRCh38 Loss LMF1-AS1 LMF1 LOC107984876
esv26288 Chr.16:922542 - 923207 on Build GRCh38 Loss LMF1-AS1 LMF1

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More Information


Additional Information:

For this assay, SNP(s) [rs112066513,rs116243780] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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