Hs03928168_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88680187 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3			NP_840101.1
	BC041461.1			AAH41461.1
	BC107058.2			AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	MVD PIEZO1 CYBA MIR4722 SNAI3-AS1 CTU2 SNAI3 LOC339059 RNF166 LOC100289580
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	MVD PIEZO1 MIR4722 SNAI3-AS1 CTU2 SNAI3 RNF166 LOC100289580
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	PIEZO1 MIR4722 SNAI3-AS1 CTU2 SNAI3 LOC339059 RNF166 LOC100289580
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	MVD ZC3H18 CYBA SNAI3-AS1 SNAI3 ZC3H18-AS1 RNF166 IL17C
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	MVD ZC3H18 MIR4722 SNAI3-AS1 CTU2 SNAI3 ZC3H18-AS1 LOC339059 MIR5189 LOC107984862 PIEZO1 CYBA ZFPM1 RNF166 LOC100289580 ZNF469 IL17C
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC105371409 PRDM7 DEF8 MIR4722 GAS8-AS1 CDH15 LOC107984817 LOC105371419 AFG3L1P CDK10 LOC105371414 URAHP RPL13 LOC101927817 DBNDD1 FANCA IL17C DPEP1 VPS9D1-AS1 LINC00304 GAS8 CTU2 SLC22A31 ZNF276 LOC339059 TUBB3 CDT1 LOC100129697 SPATA33 SPG7 ACSF3 SPIRE2 GALNS SNAI3-AS1 SNAI3 CPNE7 ZNF778 PIEZO1 CYBA LOC101927793 MC1R RNF166 LOC100289580 LOC100287036 LOC400558 ANKRD11 LOC107987238 TUBB8P7 CHMP1A MVD APRT CENPBD1 PABPN1L CBFA2T3 SPATA2L FAM157C VPS9D1 SNORD68 TRAPPC2L TCF25
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3-AS1 SNAI3

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding