Hs03928635_cn

• Gene Symbol: RAB40C
• Assay Reference Genome Location: Chr.16:592134 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 57799
• Gene Name: RAB40C, member RAS oncogene family
• Gene Aliases: RARL, RASL8C
• Location: Chr.16:589357-629273 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RAB40C	NM_001172663.1			NP_001166134.1
	NM_001172664.1			NP_001166135.1
	NM_001172665.1			NP_001166136.1
	NM_001172666.1			NP_001166137.1
	NM_021168.4			NP_066991.3
	AY823398.1			AAV83924.1
	BC028696.1			AAH28696.1
	BG696681.1
	BG715678.1
	BM545442.1
	BQ685517.1
	BX442451.2
	CX783728.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv833113	Chr.16:506513 - 628160 on Build GRCh38	Loss	LOC107987233 RAB40C NHLRC4 PIGQ PRR35 MIR3176 LINC00235 LOC101929280 CAPN15 MIR5587 RAB11FIP3
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	MLST8 MIR3178 NDUFB10 TBL3 LOC729652 FBXL16 LOC105371038 TMEM8A SOX8 LOC106660606 LOC100287175 RPUSD1 SYNGR3 MIR6768 MIR3180-5 HN1L MPG SNORA64 CLCN7 WFIKKN1 RAB26 TPSG1 SNORA10 FAM234A PGP LOC652276 SLC9A3R2 NPRL3 CCDC154 TPSAB1 WASIR2 LMF1 LOC105371184 PDIA2 TELO2 WDR90 HAGHL MIR1225 WDR24 SSTR5 RPL23AP5 GFER GNG13 RHOT2 UNKL LOC107984876 DDX11L10 NARFL ERVK13-1 SNORD60 TSC2 C16orf91 NME4 MIR6511B1 TBC1D24 DNASE1L2 LOC107987233 JMJD8 GNPTG LOC105371046 RNPS1 PRSS29P RAB11FIP3 LOC105371045 SNORA78 HBA1 LINC00254 CEMP1 SNHG9 PRSS27 METTL26 LINC00235 MIR662 HBQ1 FAHD1 HBZ LOC105371047 CRAMP1 NHLRC4 TPSD1 CHTF18 ABCA3 NOXO1 RPL3L IFT140 NME3 EME2 NTN3 C1QTNF8 TSR3 ECI1 MIR6767 METRN BRICD5 FAM173A RPS2 MIR3176 MSRB1 AMDHD2 MIR5587 MAPK8IP3 AXIN1 MIR6859-4 C16orf59 SNRNP25 SSTR5-AS1 PTX4 PIGQ ARHGDIG NPW MSLN LOC105371049 PDPK1 POLR3K TRAF7 MIR3177 HS3ST6 MRPL28 IGFALS CACNA1H RHBDL1 TPSB2 RAB40C MEIOB MIR940 RNF151 PRR25 HAGH LUC7L ATP6V0C LMF1-AS1 ABCA17P FLJ42627 CASKIN1 NUBP2 RHBDF1 KCTD5 RGS11 MIR4516 UBE2I MCRIP2 PRR35 CCDC78 STUB1 DECR2 BAIAP3 SPSB3 HBM CCNF LOC100134368 LOC101929280 ZNF598 SNHG19 TMEM204 PKD1 MIR4717 NTHL1 MIR3677 HBA2 CAPN15 MRPS34 E4F1
nsv471063	Chr.16:520623 - 852322 on Build GRCh38	Loss	RHBDL1 FBXL16 RAB40C PRR25 LOC105371038 LOC100287175 RPUSD1 METRN LOC107987233 JMJD8 MCRIP2 FAM173A PRR35 CCDC78 STUB1 MIR3176 MIR5587 RAB11FIP3 WFIKKN1 PIGQ METTL26 LINC00235 LOC101929280 MIR662 MSLN LOC105371184 WDR90 HAGHL WDR24 NHLRC4 CHTF18 GNG13 RHOT2 NARFL CAPN15
nsv526903	Chr.16:451362 - 810673 on Build GRCh38	Loss	RHBDL1 FBXL16 RAB40C PRR25 LOC105371038 LOC100287175 RPUSD1 METRN LOC107987233 JMJD8 MCRIP2 FAM173A PRR35 CCDC78 STUB1 MIR3176 MIR5587 RAB11FIP3 WFIKKN1 PIGQ METTL26 LINC00235 LOC101929280 MIR662 MSLN LOC105371184 WDR90 HAGHL WDR24 NHLRC4 CHTF18 GNG13 RHOT2 NARFL CAPN15
nsv952898	Chr.16:495001 - 1132900 on Build GRCh38	Deletion	RHBDL1 FBXL16 RAB40C PRR25 LOC105371038 C1QTNF8 LMF1-AS1 SOX8 LOC100287175 RPUSD1 METRN LOC107987233 JMJD8 MCRIP2 FAM173A PRR35 CCDC78 STUB1 MIR3176 MIR5587 RAB11FIP3 WFIKKN1 SSTR5-AS1 PIGQ METTL26 LINC00235 LOC101929280 MIR662 LMF1 MSLN LOC105371184 WDR90 HAGHL WDR24 SSTR5 NHLRC4 CHTF18 GNG13 RHOT2 LOC107984876 NARFL CAPN15
dgv4823n54	Chr.16:562698 - 662867 on Build GRCh38	Loss	WDR90 WFIKKN1 LOC107987233 MCRIP2 RAB40C NHLRC4 PIGQ PRR35 LOC105371038 METTL26 LOC101929280 LOC100287175
nsv457304	Chr.16:554554 - 611142 on Build GRCh38	Gain	LOC107987233 RAB40C NHLRC4 PIGQ PRR35 LOC101929280 CAPN15
nsv571012	Chr.16:583354 - 748489 on Build GRCh38	Loss	WFIKKN1 RHBDL1 FBXL16 RAB40C PIGQ LOC105371038 METTL26 LOC101929280 LOC105371184 LOC100287175 METRN WDR90 HAGHL WDR24 JMJD8 MCRIP2 FAM173A CCDC78 RHOT2 STUB1 NARFL
nsv1160326	Chr.16:580902 - 804689 on Build GRCh38	Duplication	RHBDL1 FBXL16 RAB40C LOC105371038 LOC100287175 RPUSD1 METRN JMJD8 MCRIP2 FAM173A CCDC78 STUB1 WFIKKN1 PIGQ METTL26 LOC101929280 MIR662 MSLN LOC105371184 WDR90 HAGHL WDR24 CHTF18 GNG13 RHOT2 NARFL
nsv1160325	Chr.16:506925 - 836376 on Build GRCh38	Duplication	RHBDL1 FBXL16 RAB40C PRR25 LOC105371038 LOC100287175 RPUSD1 METRN LOC107987233 JMJD8 MCRIP2 FAM173A PRR35 CCDC78 STUB1 MIR3176 MIR5587 RAB11FIP3 WFIKKN1 PIGQ METTL26 LINC00235 LOC101929280 MIR662 MSLN LOC105371184 WDR90 HAGHL WDR24 NHLRC4 CHTF18 GNG13 RHOT2 NARFL CAPN15

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

small GTPase mediated signal transduction
protein ubiquitination

Function(s)

GTP binding
GDP binding