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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:614942 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03928748_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss LOC107987233 PRR35 LOC101929280 NHLRC4 MIR5587 LINC00235 PIGQ RAB11FIP3 CAPN15 RAB40C MIR3176
dgv4824n54 Chr.16:605686 - 670986 on Build GRCh38 Loss WDR90 RHOT2 METTL26 LOC105371038 WFIKKN1 MCRIP2 RAB40C LOC100287175
nsv1040486 Chr.16:600788 - 627854 on Build GRCh38 Gain RAB40C
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC107987233 PRR25 HBA2 RPS2 MPG SPSB3 RAB40C WASIR2 MIR3677 NDUFB10 SNHG19 SNORA10 LOC105371038 TSC2 CAPN15 LOC106660606 CASKIN1 MRPS34 NPRL3 RNPS1 RPL3L PTX4 RAB11FIP3 LOC105371047 SSTR5-AS1 PDIA2 LUC7L TMEM8A ECI1 HBQ1 TPSD1 PGP LOC652276 LOC100134368 CACNA1H DNASE1L2 LOC105371045 FBXL16 NTHL1 NTN3 SNORD60 EME2 SYNGR3 GNG13 HN1L TPSAB1 NHLRC4 NOXO1 MSRB1 HAGHL CCDC78 MCRIP2 RNF151 PRSS29P HBZ TPSG1 BAIAP3 C16orf59 STUB1 IFT140 FAHD1 LOC729652 SNHG9 GFER MAPK8IP3 MSLN ATP6V0C DDX11L10 WDR24 LOC105371184 MIR3176 MIR4717 FAM173A LOC105371049 SNRNP25 C16orf91 DECR2 METRN MIR662 RGS11 TRAF7 RHOT2 SLC9A3R2 GNPTG TBL3 ERVK13-1 METTL26 MIR6767 TELO2 LINC00235 CEMP1 RHBDF1 LMF1-AS1 IGFALS PKD1 WFIKKN1 CCNF MIR3178 LOC105371046 MIR3180-5 NME3 ZNF598 MIR6859-4 E4F1 MIR6768 BRICD5 NUBP2 ABCA17P TMEM204 SOX8 SNORA78 LOC101929280 NARFL FLJ42627 ARHGDIG MEIOB TBC1D24 NME4 HAGH ABCA3 SSTR5 LOC107984876 LMF1 TPSB2 PRR35 MIR6511B1 RPL23AP5 UNKL CRAMP1 MRPL28 MIR5587 MIR3177 KCTD5 MIR1225 JMJD8 PDPK1 RPUSD1 HBA1 WDR90 UBE2I HBM POLR3K RAB26 MIR4516 LOC100287175 CHTF18 CLCN7 LINC00254 NPW HS3ST6 FAM234A TSR3 PIGQ MIR940 PRSS27 SNORA64 CCDC154 AXIN1 MLST8 C1QTNF8 AMDHD2 RHBDL1
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss LOC107987233 PRR25 RHOT2 LOC101929280 NARFL FBXL16 RAB40C GNG13 PRR35 NHLRC4 MIR5587 METTL26 HAGHL LOC105371038 LINC00235 CAPN15 CCDC78 JMJD8 MCRIP2 RPUSD1 WDR90 STUB1 WFIKKN1 RAB11FIP3 LOC100287175 CHTF18 MSLN WDR24 LOC105371184 MIR3176 FAM173A METRN PIGQ MIR662 RHBDL1
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss LOC107987233 PRR25 RHOT2 LOC101929280 NARFL FBXL16 RAB40C GNG13 PRR35 NHLRC4 MIR5587 METTL26 HAGHL LOC105371038 LINC00235 CAPN15 CCDC78 JMJD8 MCRIP2 RPUSD1 WDR90 STUB1 WFIKKN1 RAB11FIP3 LOC100287175 CHTF18 MSLN WDR24 LOC105371184 MIR3176 FAM173A METRN PIGQ MIR662 RHBDL1
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC107987233 PRR25 RHOT2 LOC101929280 NARFL FBXL16 RAB40C SSTR5 LOC107984876 LMF1 GNG13 PRR35 NHLRC4 MIR5587 METTL26 HAGHL LOC105371038 LINC00235 CAPN15 CCDC78 JMJD8 LMF1-AS1 MCRIP2 RPUSD1 WDR90 STUB1 WFIKKN1 RAB11FIP3 LOC100287175 CHTF18 MSLN WDR24 LOC105371184 MIR3176 SSTR5-AS1 FAM173A METRN PIGQ MIR662 C1QTNF8 RHBDL1 SOX8
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss LOC107987233 PRR35 WDR90 LOC101929280 NHLRC4 METTL26 LOC105371038 WFIKKN1 PIGQ MCRIP2 RAB40C LOC100287175
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss WDR90 RHOT2 STUB1 LOC101929280 NARFL WFIKKN1 FBXL16 RAB40C LOC100287175 WDR24 LOC105371184 FAM173A METTL26 HAGHL LOC105371038 METRN PIGQ CCDC78 JMJD8 MCRIP2 RHBDL1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication RHOT2 LOC101929280 NARFL FBXL16 RAB40C GNG13 METTL26 HAGHL LOC105371038 CCDC78 JMJD8 MCRIP2 RPUSD1 WDR90 STUB1 WFIKKN1 LOC100287175 CHTF18 MSLN WDR24 LOC105371184 FAM173A METRN PIGQ MIR662 RHBDL1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication LOC107987233 PRR25 RHOT2 LOC101929280 NARFL FBXL16 RAB40C GNG13 PRR35 NHLRC4 MIR5587 METTL26 HAGHL LOC105371038 LINC00235 CAPN15 CCDC78 JMJD8 MCRIP2 RPUSD1 WDR90 STUB1 WFIKKN1 RAB11FIP3 LOC100287175 CHTF18 MSLN WDR24 LOC105371184 MIR3176 FAM173A METRN PIGQ MIR662 RHBDL1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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