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See other MSLN CNV Assays ›
Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:762204 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03930487_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 NP_001170826.1
NM_005823.5 NP_005814.2
NM_013404.4 NP_037536.2
XM_005255034.4 XP_005255091.1
XM_011522348.2 XP_011520650.1
XM_017022853.1 XP_016878342.1
XM_017022854.1 XP_016878343.1
XM_017022855.1 XP_016878344.1
XM_017022856.1 XP_016878345.1
XM_017022857.1 XP_016878346.1
XM_017022858.1 XP_016878347.1
AL545401.3
AY743922.1 AAV87530.1
BC003512.1 AAH03512.1
BC009272.2 AAH09272.1
D49441.1 BAA08419.1
U40434.1 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571025 Chr.16:760143 - 768092 on Build GRCh38 Gain MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain PRR25 MSLN CHTF18 MIR662 GNG13 RPUSD1
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication RHOT2 SSTR5-AS1 TMEM204 NDUFB10 METTL26 NME3 RPL3L GNG13 PIGQ RPUSD1 UNKL RPL23AP5 MIR4516 CCDC78 CACNA1H WFIKKN1 UBE2I MAPK8IP3 MIR6511B1 AXIN1 LMF1-AS1 PRR25 SNORA10 DECR2 LOC106660606 MIR3180-5 NME4 SPSB3 MRPL28 IGFALS HBZ LOC105371046 MIR3178 TSR3 LOC100134368 TSC2 NARFL RAB40C SYNGR3 HBA2 LINC00254 JMJD8 WDR90 RPS2 LOC100287175 MIR940 ZNF598 RGS11 STUB1 GFER MLST8 LMF1 LOC105371038 DDX11L10 PRSS29P MSLN MIR6768 FAM173A KCTD5 PDPK1 MIR3176 ABCA17P PRR35 PGP CAPN15 NTN3 HAGHL LOC105371045 MEIOB ARHGDIG MIR3177 CASKIN1 TBL3 MIR5587 LOC101929280 SNORA64 CEMP1 HN1L METRN SNHG9 PTX4 C16orf59 HS3ST6 TELO2 LINC00235 RHBDL1 HBM RNF151 HAGH CRAMP1 TPSAB1 SOX8 LOC729652 BAIAP3 MCRIP2 BRICD5 FBXL16 WDR24 E4F1 LUC7L FAM234A IFT140 FLJ42627 ABCA3 NUBP2 HBQ1 RHBDF1 RAB26 ATP6V0C MIR6767 LOC105371184 RNPS1 FAHD1 PKD1 EME2 CCDC154 C1QTNF8 MPG NPW TPSD1 CLCN7 LOC107987233 SNRNP25 TMEM8A GNPTG LOC652276 C16orf91 CHTF18 POLR3K HBA1 AMDHD2 NTHL1 RAB11FIP3 MRPS34 NHLRC4 WASIR2 SNHG19 MIR1225 MIR662 SNORA78 PDIA2 TBC1D24 SLC9A3R2 SNORD60 TRAF7 TPSG1 NOXO1 TPSB2 LOC107984876 MIR4717 NPRL3 MIR3677 LOC105371047 ECI1 SSTR5 CCNF MSRB1 DNASE1L2 MIR6859-4 LOC105371049 ERVK13-1 PRSS27
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MSLN MIR662
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss LOC107987233 LOC100287175 RHOT2 CHTF18 STUB1 METTL26 GNG13 PIGQ RPUSD1 LOC105371038 MCRIP2 RAB11FIP3 NHLRC4 MSLN FBXL16 WDR24 FAM173A CCDC78 MIR3176 MIR662 WFIKKN1 PRR35 PRR25 CAPN15 HAGHL LOC105371184 MIR5587 LOC101929280 METRN NARFL RAB40C JMJD8 WDR90 LINC00235 RHBDL1
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss LOC107987233 LOC100287175 RHOT2 CHTF18 STUB1 METTL26 GNG13 PIGQ RPUSD1 LOC105371038 MCRIP2 RAB11FIP3 NHLRC4 MSLN FBXL16 WDR24 FAM173A CCDC78 MIR3176 MIR662 WFIKKN1 PRR35 PRR25 CAPN15 HAGHL LOC105371184 MIR5587 LOC101929280 METRN NARFL RAB40C JMJD8 WDR90 LINC00235 RHBDL1
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MSLN MIR662
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC107987233 LOC100287175 RHOT2 SSTR5-AS1 CHTF18 STUB1 METTL26 SOX8 GNG13 PIGQ RPUSD1 LMF1 LOC105371038 MCRIP2 RAB11FIP3 NHLRC4 MSLN FBXL16 WDR24 FAM173A CCDC78 MIR3176 MIR662 WFIKKN1 PRR35 LMF1-AS1 PRR25 CAPN15 HAGHL LOC107984876 LOC105371184 MIR5587 LOC101929280 SSTR5 METRN NARFL RAB40C C1QTNF8 JMJD8 WDR90 LINC00235 RHBDL1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC100287175 RHOT2 CHTF18 STUB1 METTL26 GNG13 PIGQ RPUSD1 LOC105371038 MCRIP2 MSLN FBXL16 WDR24 FAM173A CCDC78 MIR662 WFIKKN1 HAGHL LOC105371184 LOC101929280 METRN NARFL RAB40C JMJD8 WDR90 RHBDL1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication LOC107987233 LOC100287175 RHOT2 CHTF18 STUB1 METTL26 GNG13 PIGQ RPUSD1 LOC105371038 MCRIP2 RAB11FIP3 NHLRC4 MSLN FBXL16 WDR24 FAM173A CCDC78 MIR3176 MIR662 WFIKKN1 PRR35 PRR25 CAPN15 HAGHL LOC105371184 MIR5587 LOC101929280 METRN NARFL RAB40C JMJD8 WDR90 LINC00235 RHBDL1
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss LOC100287175 HAGHL RHOT2 CHTF18 STUB1 LOC105371184 GNG13 RPUSD1 LOC105371038 MCRIP2 METRN NARFL MSLN FBXL16 WDR24 FAM173A CCDC78 MIR662 JMJD8 WDR90 RHBDL1
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss PRR25 MSLN CHTF18 MIR662 GNG13 RPUSD1
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MSLN MIR662

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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