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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:610949 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03930633_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4824n54 Chr.16:605686 - 670986 on Build GRCh38 Loss METTL26 LOC105371038 RAB40C MCRIP2 WDR90 WFIKKN1 RHOT2 LOC100287175
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss LINC00235 MIR5587 PRR35 RAB40C PIGQ RAB11FIP3 LOC107987233 MIR3176 LOC101929280 CAPN15 NHLRC4
nsv1040486 Chr.16:600788 - 627854 on Build GRCh38 Gain RAB40C
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MRPS34 HBA2 LOC105371184 TRAF7 TELO2 NTHL1 FAM234A CLCN7 LOC652276 RHBDF1 POLR3K UBE2I TSC2 NUBP2 LOC100287175 TBC1D24 PGP RPUSD1 MIR3180-5 CEMP1 C1QTNF8 NTN3 ERVK13-1 PTX4 GNG13 LOC105371038 RAB40C SOX8 TPSG1 HBA1 MIR6767 LOC107987233 RHOT2 MIR4717 PDIA2 LUC7L NME4 JMJD8 NHLRC4 BRICD5 MAPK8IP3 SNORA10 MLST8 WDR90 CCNF SSTR5-AS1 NPW ARHGDIG MIR3177 PRR25 CCDC154 IFT140 MIR1225 PRSS29P NDUFB10 DNASE1L2 NARFL NPRL3 METRN SNHG9 SYNGR3 GFER CASKIN1 RHBDL1 LINC00254 LOC100134368 HAGH MIR5587 FLJ42627 CRAMP1 LMF1-AS1 LOC101929280 HBZ CAPN15 MIR6511B1 SNORA78 DECR2 SNHG19 WFIKKN1 SNORD60 ECI1 LOC105371045 LOC105371047 EME2 METTL26 FAHD1 PIGQ MIR662 MSRB1 RAB11FIP3 MPG HAGHL PRSS27 STUB1 LOC729652 SPSB3 SSTR5 ATP6V0C FAM173A C16orf91 GNPTG LMF1 IGFALS MRPL28 MCRIP2 HN1L LOC105371046 WASIR2 C16orf59 UNKL MIR4516 MIR940 KCTD5 AMDHD2 PKD1 TPSAB1 RPL3L PDPK1 LOC105371049 HBM MIR6859-4 TPSD1 DDX11L10 FBXL16 TPSB2 ZNF598 SNRNP25 E4F1 ABCA3 AXIN1 TMEM8A TBL3 RPS2 NOXO1 HBQ1 CCDC78 CHTF18 MIR3178 HS3ST6 RPL23AP5 LOC106660606 MIR6768 SNORA64 SLC9A3R2 MIR3677 PRR35 MEIOB RAB26 ABCA17P TSR3 BAIAP3 RGS11 MSLN NME3 LOC107984876 RNF151 LINC00235 WDR24 TMEM204 RNPS1 MIR3176 CACNA1H
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss PRR25 LOC105371184 METTL26 PIGQ MIR662 RAB11FIP3 HAGHL STUB1 CCDC78 LOC100287175 RPUSD1 CHTF18 FAM173A NARFL MCRIP2 METRN RHBDL1 GNG13 MIR5587 LOC105371038 PRR35 RAB40C LOC107987233 RHOT2 LOC101929280 JMJD8 MSLN CAPN15 NHLRC4 LINC00235 WDR24 WDR90 FBXL16 WFIKKN1 MIR3176
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss PRR25 LOC105371184 METTL26 PIGQ MIR662 RAB11FIP3 HAGHL STUB1 CCDC78 LOC100287175 RPUSD1 CHTF18 FAM173A NARFL MCRIP2 METRN RHBDL1 GNG13 MIR5587 LOC105371038 PRR35 RAB40C LOC107987233 RHOT2 LOC101929280 JMJD8 MSLN CAPN15 NHLRC4 LINC00235 WDR24 WDR90 FBXL16 WFIKKN1 MIR3176
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion PRR25 LOC105371184 METTL26 PIGQ MIR662 RAB11FIP3 HAGHL STUB1 CCDC78 LOC100287175 RPUSD1 CHTF18 SSTR5 FAM173A NARFL LMF1 MCRIP2 METRN C1QTNF8 RHBDL1 GNG13 MIR5587 LOC105371038 PRR35 RAB40C SOX8 LOC107987233 RHOT2 LMF1-AS1 LOC101929280 JMJD8 MSLN CAPN15 NHLRC4 LOC107984876 LINC00235 WDR24 WDR90 SSTR5-AS1 FBXL16 WFIKKN1 MIR3176
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss METTL26 LOC105371038 PRR35 RAB40C MCRIP2 PIGQ WDR90 WFIKKN1 LOC107987233 LOC101929280 LOC100287175 NHLRC4
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain PRR35 RAB40C PIGQ LOC107987233 LOC101929280 CAPN15 NHLRC4
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss LOC105371184 METTL26 LOC105371038 RAB40C PIGQ RHOT2 LOC101929280 HAGHL JMJD8 STUB1 CCDC78 LOC100287175 FAM173A WDR24 NARFL MCRIP2 METRN WDR90 FBXL16 WFIKKN1 RHBDL1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC105371184 METTL26 PIGQ MIR662 HAGHL STUB1 CCDC78 LOC100287175 RPUSD1 CHTF18 FAM173A NARFL MCRIP2 METRN RHBDL1 GNG13 LOC105371038 RAB40C RHOT2 LOC101929280 JMJD8 MSLN WDR24 WDR90 FBXL16 WFIKKN1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication PRR25 LOC105371184 METTL26 PIGQ MIR662 RAB11FIP3 HAGHL STUB1 CCDC78 LOC100287175 RPUSD1 CHTF18 FAM173A NARFL MCRIP2 METRN RHBDL1 GNG13 MIR5587 LOC105371038 PRR35 RAB40C LOC107987233 RHOT2 LOC101929280 JMJD8 MSLN CAPN15 NHLRC4 LINC00235 WDR24 WDR90 FBXL16 WFIKKN1 MIR3176

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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