Hs03931210_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88684142 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3			NP_840101.1
	BC041461.1			AAH41461.1
	BC107058.2			AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	CTU2 MVD SNAI3 SNAI3-AS1 LOC339059 MIR4722 RNF166 LOC100289580 PIEZO1 CYBA
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	CTU2 SNAI3 SNAI3-AS1 LOC339059 MIR4722 CDT1 LOC107987238 RNF166 LOC100289580 PIEZO1 APRT GALNS
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	CTU2 MVD SNAI3 SNAI3-AS1 MIR4722 RNF166 LOC100289580 PIEZO1
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	CTU2 SNAI3 SNAI3-AS1 LOC339059 MIR4722 RNF166 LOC100289580 PIEZO1
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	MVD IL17C SNAI3 SNAI3-AS1 ZC3H18-AS1 RNF166 CYBA ZC3H18
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	CTU2 MVD MIR5189 IL17C ZC3H18-AS1 ZFPM1 ZNF469 PIEZO1 CYBA ZC3H18 SNAI3 SNAI3-AS1 LOC339059 MIR4722 LOC107984862 RNF166 LOC100289580
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LINC00304 LOC101927817 PABPN1L TRAPPC2L MC1R LOC107984817 LOC107987238 TUBB3 SPATA2L ZNF276 PRDM7 ZNF778 DEF8 MVD DPEP1 LOC100129697 PIEZO1 LOC105371409 ACSF3 RPL13 SPIRE2 LOC105371419 LOC105371414 CHMP1A MIR4722 CDK10 APRT LOC100287036 IL17C SPATA33 URAHP CPNE7 TCF25 VPS9D1 FAM157C VPS9D1-AS1 GAS8 TUBB8P7 SNAI3-AS1 LOC400558 CDT1 RNF166 DBNDD1 FANCA CTU2 AFG3L1P LOC101927793 SPG7 CDH15 CYBA ANKRD11 CENPBD1 SNAI3 LOC339059 SNORD68 LOC100289580 CBFA2T3 GAS8-AS1 SLC22A31 GALNS
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3 SNAI3-AS1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding