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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:607084 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03932378_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4824n54 Chr.16:605686 - 670986 on Build GRCh38 Loss RHOT2 MCRIP2 LOC100287175 METTL26 WDR90 WFIKKN1 LOC105371038 RAB40C
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss MIR5587 NHLRC4 CAPN15 RAB11FIP3 PIGQ MIR3176 LINC00235 LOC107987233 LOC101929280 PRR35 RAB40C
nsv1040486 Chr.16:600788 - 627854 on Build GRCh38 Gain RAB40C
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SNHG9 MIR662 HN1L NPRL3 TPSAB1 C16orf59 NARFL LOC105371038 PRSS27 ABCA17P TPSG1 NTN3 MPG METRN LOC105371046 DDX11L10 MIR6511B1 LOC100134368 KCTD5 CCDC154 DNASE1L2 AMDHD2 NME4 LOC105371047 SNORA78 AXIN1 PRSS29P NOXO1 HAGH HS3ST6 SNRNP25 MIR3677 MLST8 EME2 TMEM204 IGFALS FAHD1 LINC00254 MSRB1 HBZ LOC105371184 TRAF7 SNORA64 C1QTNF8 FAM234A SNHG19 FLJ42627 MEIOB SYNGR3 LMF1 ATP6V0C GFER HBM PRR25 NPW DECR2 PDIA2 LUC7L NHLRC4 MIR3176 MRPS34 MRPL28 IFT140 PDPK1 RPS2 WASIR2 MIR940 CHTF18 POLR3K SSTR5-AS1 MSLN SLC9A3R2 RNF151 TMEM8A CASKIN1 TBC1D24 WDR90 FBXL16 CACNA1H CLCN7 LOC101929280 RNPS1 WFIKKN1 JMJD8 C16orf91 CAPN15 LOC105371045 RAB11FIP3 PIGQ NTHL1 NME3 LMF1-AS1 PKD1 LOC106660606 ZNF598 HBA2 METTL26 TPSB2 MIR4516 SOX8 RHBDF1 LINC00235 LOC107987233 NDUFB10 E4F1 GNG13 CRAMP1 RPL23AP5 CCDC78 LOC100287175 SNORA10 HAGHL RHBDL1 FAM173A PTX4 UBE2I MIR3178 ARHGDIG HBQ1 NUBP2 TPSD1 GNPTG BAIAP3 MIR4717 SPSB3 TBL3 MCRIP2 TSC2 MIR6859-4 MIR6768 BRICD5 MIR1225 RGS11 RPL3L RAB40C LOC729652 RAB26 HBA1 LOC105371049 UNKL STUB1 MIR3180-5 RHOT2 TELO2 LOC107984876 CCNF MIR3177 ABCA3 TSR3 WDR24 PRR35 LOC652276 PGP CEMP1 MIR5587 ECI1 MIR6767 ERVK13-1 SSTR5 SNORD60 MAPK8IP3 RPUSD1
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss MIR662 JMJD8 MCRIP2 CAPN15 RAB11FIP3 PIGQ PRR25 NARFL LOC105371038 RAB40C METTL26 NHLRC4 METRN MIR3176 LINC00235 LOC107987233 STUB1 GNG13 CHTF18 RHOT2 CCDC78 LOC100287175 HAGHL RHBDL1 FAM173A WDR24 MSLN PRR35 MIR5587 WDR90 FBXL16 LOC105371184 LOC101929280 WFIKKN1 RPUSD1
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss MIR662 JMJD8 MCRIP2 CAPN15 RAB11FIP3 PIGQ PRR25 NARFL LOC105371038 RAB40C METTL26 NHLRC4 METRN MIR3176 LINC00235 LOC107987233 STUB1 GNG13 CHTF18 RHOT2 CCDC78 LOC100287175 HAGHL RHBDL1 FAM173A WDR24 MSLN PRR35 MIR5587 WDR90 FBXL16 LOC105371184 LOC101929280 WFIKKN1 RPUSD1
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion MIR662 JMJD8 MCRIP2 CAPN15 RAB11FIP3 LMF1 PIGQ PRR25 NARFL LOC105371038 LMF1-AS1 RAB40C METTL26 NHLRC4 METRN SOX8 MIR3176 LINC00235 LOC107987233 STUB1 GNG13 CHTF18 RHOT2 CCDC78 LOC100287175 HAGHL RHBDL1 FAM173A LOC107984876 SSTR5-AS1 WDR24 MSLN PRR35 MIR5587 WDR90 SSTR5 FBXL16 LOC105371184 LOC101929280 C1QTNF8 WFIKKN1 RPUSD1
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss MCRIP2 LOC100287175 METTL26 NHLRC4 WDR90 PIGQ LOC107987233 LOC101929280 PRR35 WFIKKN1 LOC105371038 RAB40C
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain NHLRC4 CAPN15 PIGQ LOC107987233 LOC101929280 PRR35 RAB40C
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss JMJD8 RHOT2 MCRIP2 CCDC78 LOC100287175 HAGHL RHBDL1 FAM173A PIGQ WDR24 NARFL LOC105371038 RAB40C METTL26 WDR90 FBXL16 METRN LOC105371184 LOC101929280 STUB1 WFIKKN1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication MIR662 JMJD8 MCRIP2 PIGQ NARFL LOC105371038 RAB40C METTL26 METRN STUB1 GNG13 CHTF18 RHOT2 CCDC78 LOC100287175 HAGHL RHBDL1 FAM173A WDR24 MSLN WDR90 FBXL16 LOC105371184 LOC101929280 WFIKKN1 RPUSD1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication MIR662 JMJD8 MCRIP2 CAPN15 RAB11FIP3 PIGQ PRR25 NARFL LOC105371038 RAB40C METTL26 NHLRC4 METRN MIR3176 LINC00235 LOC107987233 STUB1 GNG13 CHTF18 RHOT2 CCDC78 LOC100287175 HAGHL RHBDL1 FAM173A WDR24 MSLN PRR35 MIR5587 WDR90 FBXL16 LOC105371184 LOC101929280 WFIKKN1 RPUSD1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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