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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:599100 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03932535_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss LINC00235 RAB40C PIGQ CAPN15 MIR3176 LOC101929280 MIR5587 LOC107987233 NHLRC4 RAB11FIP3 PRR35
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR940 UNKL MIR3176 LOC729652 TSR3 WDR90 RPUSD1 CCNF TRAF7 MIR3178 ATP6V0C NDUFB10 SNHG9 SNORA64 WDR24 NME4 POLR3K TELO2 FLJ42627 WFIKKN1 SNRNP25 TMEM8A MIR5587 TPSD1 LOC105371049 MCRIP2 PRSS29P NOXO1 RPL3L PRSS27 CHTF18 LMF1 HBQ1 SNHG19 LOC652276 IGFALS TPSB2 HBM HBA2 SNORA78 CAPN15 SNORA10 HBA1 C1QTNF8 PGP RAB11FIP3 BAIAP3 MIR4516 MSRB1 LOC105371047 BRICD5 LUC7L RPL23AP5 MIR3677 PDIA2 SYNGR3 CLCN7 LOC105371046 NHLRC4 MIR3180-5 HN1L TBC1D24 NUBP2 NPRL3 RHBDL1 RNF151 LOC105371038 CASKIN1 SNORD60 RNPS1 MLST8 AXIN1 RAB26 LOC100134368 FAM173A E4F1 ABCA17P RGS11 DNASE1L2 CCDC154 ERVK13-1 LMF1-AS1 MIR6511B1 MIR3177 RHOT2 TSC2 SSTR5 NTN3 GNPTG LOC105371184 MRPS34 RPS2 HAGH MIR662 MIR1225 UBE2I DECR2 PTX4 LINC00235 DDX11L10 TPSAB1 NTHL1 NARFL GNG13 MIR6859-4 MEIOB CEMP1 FAM234A SOX8 TMEM204 SLC9A3R2 PDPK1 METRN FBXL16 JMJD8 C16orf91 HAGHL CRAMP1 TBL3 STUB1 C16orf59 LOC106660606 FAHD1 IFT140 MSLN LOC100287175 LOC101929280 HS3ST6 LOC107984876 HBZ CCDC78 LOC105371045 ARHGDIG MAPK8IP3 TPSG1 MRPL28 PIGQ LOC107987233 MIR4717 PKD1 MIR6768 LINC00254 NPW ZNF598 ABCA3 PRR35 WASIR2 SPSB3 RHBDF1 AMDHD2 GFER ECI1 METTL26 RAB40C KCTD5 EME2 PRR25 NME3 CACNA1H SSTR5-AS1 MPG MIR6767
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss STUB1 MSLN CAPN15 MIR3176 LOC100287175 LOC101929280 RAB11FIP3 RHOT2 CCDC78 WDR90 LOC105371184 PIGQ RPUSD1 LOC107987233 NHLRC4 MIR662 WDR24 LINC00235 WFIKKN1 RHBDL1 NARFL GNG13 MIR5587 LOC105371038 PRR35 MCRIP2 CHTF18 METRN FBXL16 METTL26 RAB40C JMJD8 FAM173A PRR25 HAGHL
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss STUB1 MSLN CAPN15 MIR3176 LOC100287175 LOC101929280 RAB11FIP3 RHOT2 CCDC78 WDR90 LOC105371184 PIGQ RPUSD1 LOC107987233 NHLRC4 MIR662 WDR24 LINC00235 WFIKKN1 RHBDL1 NARFL GNG13 MIR5587 LOC105371038 PRR35 MCRIP2 CHTF18 METRN FBXL16 METTL26 RAB40C JMJD8 FAM173A PRR25 HAGHL
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion STUB1 LMF1-AS1 MSLN CAPN15 MIR3176 LOC100287175 LOC101929280 C1QTNF8 RAB11FIP3 RHOT2 LOC107984876 CCDC78 SSTR5 WDR90 LOC105371184 PIGQ RPUSD1 LOC107987233 NHLRC4 MIR662 WDR24 LINC00235 WFIKKN1 RHBDL1 NARFL GNG13 MIR5587 SOX8 LOC105371038 PRR35 MCRIP2 CHTF18 LMF1 METRN FBXL16 METTL26 RAB40C JMJD8 FAM173A PRR25 SSTR5-AS1 HAGHL
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss WDR90 METTL26 RAB40C PIGQ LOC100287175 WFIKKN1 LOC101929280 LOC107987233 NHLRC4 LOC105371038 PRR35 MCRIP2
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain RAB40C PIGQ CAPN15 LOC101929280 LOC107987233 NHLRC4 PRR35
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss STUB1 LOC100287175 WFIKKN1 RHBDL1 LOC101929280 NARFL LOC105371038 RHOT2 MCRIP2 CCDC78 METRN WDR90 FBXL16 METTL26 RAB40C JMJD8 LOC105371184 PIGQ FAM173A HAGHL WDR24
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication STUB1 MSLN LOC100287175 LOC101929280 RHOT2 CCDC78 WDR90 LOC105371184 PIGQ RPUSD1 MIR662 WDR24 WFIKKN1 RHBDL1 NARFL GNG13 LOC105371038 MCRIP2 CHTF18 METRN FBXL16 METTL26 RAB40C JMJD8 FAM173A HAGHL
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication STUB1 MSLN CAPN15 MIR3176 LOC100287175 LOC101929280 RAB11FIP3 RHOT2 CCDC78 WDR90 LOC105371184 PIGQ RPUSD1 LOC107987233 NHLRC4 MIR662 WDR24 LINC00235 WFIKKN1 RHBDL1 NARFL GNG13 MIR5587 LOC105371038 PRR35 MCRIP2 CHTF18 METRN FBXL16 METTL26 RAB40C JMJD8 FAM173A PRR25 HAGHL

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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