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See other MSLN CNV Assays ›
Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:761861 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03932599_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 NP_001170826.1
NM_005823.5 NP_005814.2
NM_013404.4 NP_037536.2
XM_005255034.4 XP_005255091.1
XM_011522348.2 XP_011520650.1
XM_017022853.1 1 264 XP_016878342.1
XM_017022854.1 1 278 XP_016878343.1
XM_017022855.1 1 197 XP_016878344.1
XM_017022856.1 1 201 XP_016878345.1
XM_017022857.1 XP_016878346.1
XM_017022858.1 XP_016878347.1
AL545401.3
AY743922.1 AAV87530.1
BC003512.1 AAH03512.1
BC009272.2 AAH09272.1
D49441.1 BAA08419.1
U40434.1 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571025 Chr.16:760143 - 768092 on Build GRCh38 Gain MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain GNG13 MSLN MIR662 CHTF18 RPUSD1 PRR25
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication KCTD5 PKD1 TPSB2 NUBP2 NOXO1 WFIKKN1 SPSB3 HAGH ECI1 SNORA64 CRAMP1 CASKIN1 AXIN1 NME3 PRSS27 MRPS34 UBE2I CEMP1 RNF151 NARFL NME4 TMEM204 CCDC78 LUC7L HN1L FAM234A MIR6511B1 PGP LOC105371038 LOC100287175 RPL23AP5 LOC105371047 MIR3677 MIR5587 RAB11FIP3 CAPN15 SNORD60 NDUFB10 METTL26 ATP6V0C MIR3180-5 FLJ42627 TPSG1 RHBDL1 HBZ LOC101929280 LOC105371046 SNRNP25 HS3ST6 PIGQ LOC107987233 PRSS29P MIR3176 FAHD1 GFER RHOT2 AMDHD2 RNPS1 HBA2 MIR6859-4 GNPTG SNHG9 RAB40C NHLRC4 LOC105371049 LOC100134368 UNKL DDX11L10 C16orf91 E4F1 LOC105371184 HAGHL LINC00235 HBQ1 LMF1-AS1 SNORA78 GNG13 RAB26 MIR4516 MIR3177 C16orf59 NPW WDR90 WDR24 MLST8 FBXL16 MCRIP2 MIR940 JMJD8 CACNA1H IFT140 ZNF598 TMEM8A NTN3 C1QTNF8 BRICD5 RPL3L SOX8 MAPK8IP3 MIR6767 WASIR2 CLCN7 TPSAB1 FAM173A RPS2 POLR3K LMF1 EME2 CCDC154 RHBDF1 NPRL3 MIR6768 SSTR5 ABCA3 MIR4717 TSC2 RPUSD1 ARHGDIG IGFALS CCNF LINC00254 STUB1 METRN HBM MIR662 RGS11 NTHL1 SLC9A3R2 PTX4 SYNGR3 SNORA10 LOC729652 PDIA2 MSRB1 LOC106660606 PDPK1 DECR2 PRR35 TPSD1 PRR25 LOC107984876 TRAF7 MIR1225 LOC105371045 CHTF18 MPG TSR3 MIR3178 ERVK13-1 TELO2 MEIOB LOC652276 TBL3 MSLN MRPL28 SSTR5-AS1 TBC1D24 BAIAP3 SNHG19 ABCA17P HBA1 DNASE1L2
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MSLN MIR662
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss STUB1 FBXL16 MCRIP2 METRN MIR662 METTL26 JMJD8 RHBDL1 WFIKKN1 LOC101929280 PIGQ LOC107987233 MIR3176 PRR35 RHOT2 PRR25 NARFL RAB40C NHLRC4 FAM173A CHTF18 CCDC78 LOC105371184 HAGHL LINC00235 LOC105371038 LOC100287175 GNG13 MSLN RPUSD1 MIR5587 WDR90 RAB11FIP3 WDR24 CAPN15
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss STUB1 FBXL16 MCRIP2 METRN MIR662 METTL26 JMJD8 RHBDL1 WFIKKN1 LOC101929280 PIGQ LOC107987233 MIR3176 PRR35 RHOT2 PRR25 NARFL RAB40C NHLRC4 FAM173A CHTF18 CCDC78 LOC105371184 HAGHL LINC00235 LOC105371038 LOC100287175 GNG13 MSLN RPUSD1 MIR5587 WDR90 RAB11FIP3 WDR24 CAPN15
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MSLN MIR662
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion STUB1 FBXL16 MCRIP2 METRN MIR662 METTL26 JMJD8 RHBDL1 WFIKKN1 LOC101929280 PIGQ C1QTNF8 LOC107987233 MIR3176 PRR35 RHOT2 PRR25 SOX8 NARFL RAB40C NHLRC4 LOC107984876 FAM173A CHTF18 CCDC78 LMF1 LOC105371184 HAGHL LINC00235 LOC105371038 LMF1-AS1 LOC100287175 GNG13 MSLN SSTR5 RPUSD1 SSTR5-AS1 MIR5587 WDR90 RAB11FIP3 WDR24 CAPN15
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication STUB1 FBXL16 MCRIP2 METRN MIR662 METTL26 JMJD8 RHBDL1 WFIKKN1 LOC101929280 PIGQ RHOT2 NARFL RAB40C FAM173A CHTF18 CCDC78 LOC105371184 HAGHL LOC105371038 LOC100287175 GNG13 MSLN RPUSD1 WDR90 WDR24
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication STUB1 FBXL16 MCRIP2 METRN MIR662 METTL26 JMJD8 RHBDL1 WFIKKN1 LOC101929280 PIGQ LOC107987233 MIR3176 PRR35 RHOT2 PRR25 NARFL RAB40C NHLRC4 FAM173A CHTF18 CCDC78 LOC105371184 HAGHL LINC00235 LOC105371038 LOC100287175 GNG13 MSLN RPUSD1 MIR5587 WDR90 RAB11FIP3 WDR24 CAPN15
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss NARFL STUB1 FBXL16 MCRIP2 METRN MIR662 FAM173A JMJD8 CHTF18 RHBDL1 CCDC78 LOC105371184 HAGHL LOC105371038 LOC100287175 GNG13 MSLN RHOT2 RPUSD1 WDR90 WDR24
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss GNG13 MSLN MIR662 CHTF18 RPUSD1 PRR25
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MSLN MIR662

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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