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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:603234 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03932654_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss LOC101929280 LINC00235 RAB11FIP3 PIGQ NHLRC4 CAPN15 PRR35 MIR5587 LOC107987233 MIR3176 RAB40C
nsv1040486 Chr.16:600788 - 627854 on Build GRCh38 Gain RAB40C
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MPG RPL23AP5 TPSAB1 PRR35 MIR3180-5 SNHG19 JMJD8 PTX4 MCRIP2 MIR6768 FAM234A FLJ42627 NOXO1 RPUSD1 CCNF AXIN1 CAPN15 PKD1 MIR5587 LOC100134368 MIR3176 LOC105371046 WDR24 NPW PRR25 MIR4516 WDR90 MRPL28 STUB1 NARFL PGP FAM173A C16orf59 RAB11FIP3 UBE2I EME2 TRAF7 HAGH ARHGDIG LINC00254 SPSB3 RHBDL1 METTL26 POLR3K MAPK8IP3 TPSB2 LINC00235 MRPS34 PDIA2 TBL3 NTN3 RNF151 HBM LMF1 MIR6767 LOC652276 SNHG9 HAGHL MIR3677 METRN IGFALS RHBDF1 HBZ SNORA78 DECR2 C16orf91 TBC1D24 ERVK13-1 MIR6859-4 HS3ST6 LOC107984876 CRAMP1 HBQ1 NHLRC4 SSTR5-AS1 TELO2 ABCA17P CEMP1 SYNGR3 LOC101929280 ZNF598 GFER MSLN MIR3178 RPL3L RGS11 TMEM8A AMDHD2 TMEM204 MLST8 CACNA1H LOC729652 TSR3 LUC7L WFIKKN1 DDX11L10 TSC2 FBXL16 MIR4717 PRSS27 HBA1 E4F1 LOC105371184 SNORA10 CCDC154 MIR662 BRICD5 LMF1-AS1 NME3 DNASE1L2 IFT140 SSTR5 WASIR2 MIR3177 RHOT2 CCDC78 HN1L LOC105371047 RAB26 LOC105371049 TPSG1 BAIAP3 KCTD5 RPS2 SNORD60 LOC100287175 ATP6V0C MIR1225 NTHL1 LOC106660606 MIR940 SNRNP25 SOX8 LOC105371045 RAB40C TPSD1 CLCN7 LOC105371038 NDUFB10 PRSS29P GNG13 UNKL RNPS1 NUBP2 NPRL3 MIR6511B1 NME4 GNPTG PIGQ ECI1 C1QTNF8 SLC9A3R2 FAHD1 HBA2 PDPK1 MEIOB MSRB1 LOC107987233 CHTF18 CASKIN1 ABCA3 SNORA64
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss LOC101929280 CCDC78 RAB11FIP3 MSLN PRR35 RHBDL1 METTL26 JMJD8 LOC100287175 LINC00235 MCRIP2 RAB40C HAGHL LOC105371038 METRN WFIKKN1 GNG13 RPUSD1 CAPN15 FBXL16 LOC105371184 MIR5587 MIR3176 WDR24 PRR25 PIGQ MIR662 WDR90 NHLRC4 STUB1 LOC107987233 NARFL CHTF18 RHOT2 FAM173A
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss LOC101929280 CCDC78 RAB11FIP3 MSLN PRR35 RHBDL1 METTL26 JMJD8 LOC100287175 LINC00235 MCRIP2 RAB40C HAGHL LOC105371038 METRN WFIKKN1 GNG13 RPUSD1 CAPN15 FBXL16 LOC105371184 MIR5587 MIR3176 WDR24 PRR25 PIGQ MIR662 WDR90 NHLRC4 STUB1 LOC107987233 NARFL CHTF18 RHOT2 FAM173A
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC101929280 CCDC78 RAB11FIP3 MSLN PRR35 RHBDL1 METTL26 JMJD8 LOC100287175 LINC00235 MCRIP2 SOX8 LMF1 RAB40C HAGHL LOC105371038 METRN WFIKKN1 GNG13 RPUSD1 CAPN15 FBXL16 LOC105371184 MIR5587 MIR3176 WDR24 PRR25 LOC107984876 PIGQ MIR662 WDR90 C1QTNF8 NHLRC4 LMF1-AS1 SSTR5-AS1 SSTR5 STUB1 LOC107987233 NARFL CHTF18 RHOT2 FAM173A
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss LOC105371038 LOC101929280 LOC100287175 PIGQ WDR90 WFIKKN1 NHLRC4 MCRIP2 PRR35 LOC107987233 RAB40C METTL26
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain LOC101929280 PIGQ NHLRC4 CAPN15 PRR35 LOC107987233 RAB40C
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss HAGHL LOC105371038 LOC101929280 CCDC78 METRN WFIKKN1 FBXL16 LOC105371184 WDR24 RHBDL1 METTL26 JMJD8 LOC100287175 PIGQ WDR90 MCRIP2 STUB1 NARFL RAB40C RHOT2 FAM173A
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC101929280 CCDC78 MSLN RHBDL1 METTL26 JMJD8 LOC100287175 MCRIP2 RAB40C HAGHL LOC105371038 METRN WFIKKN1 GNG13 RPUSD1 FBXL16 LOC105371184 WDR24 PIGQ MIR662 WDR90 STUB1 NARFL CHTF18 RHOT2 FAM173A
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication LOC101929280 CCDC78 RAB11FIP3 MSLN PRR35 RHBDL1 METTL26 JMJD8 LOC100287175 LINC00235 MCRIP2 RAB40C HAGHL LOC105371038 METRN WFIKKN1 GNG13 RPUSD1 CAPN15 FBXL16 LOC105371184 MIR5587 MIR3176 WDR24 PRR25 PIGQ MIR662 WDR90 NHLRC4 STUB1 LOC107987233 NARFL CHTF18 RHOT2 FAM173A

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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