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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:593537 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03932956_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss MIR5587 MIR3176 RAB11FIP3 PIGQ PRR35 LOC107987233 NHLRC4 LOC101929280 CAPN15 RAB40C LINC00235
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication C16orf91 MAPK8IP3 TRAF7 AMDHD2 LMF1-AS1 DDX11L10 WDR90 PRR25 LOC105371046 SNRNP25 CCDC154 CCDC78 CCNF MEIOB BAIAP3 IGFALS CRAMP1 NPRL3 MLST8 MIR1225 GNPTG PTX4 PKD1 LOC107987233 SPSB3 LOC105371049 LUC7L ECI1 METTL26 NTN3 ERVK13-1 CHTF18 PRSS29P LOC652276 UNKL UBE2I MPG GFER PDPK1 SYNGR3 HBM MIR940 LOC729652 TSC2 NTHL1 MIR662 SNORD60 RNPS1 TSR3 TBC1D24 MIR3178 SNHG19 LOC100287175 RHBDL1 MIR6859-4 ABCA17P LOC107984876 ARHGDIG MIR4516 RGS11 MIR6767 FAM234A MCRIP2 DNASE1L2 MSLN TPSAB1 SNORA78 GNG13 NPW LOC105371184 SNHG9 NARFL MIR6768 ZNF598 PIGQ FAHD1 C1QTNF8 MSRB1 JMJD8 WASIR2 METRN RHOT2 STUB1 HBZ PGP HBQ1 RPL23AP5 CACNA1H RPL3L MIR3180-5 PDIA2 FAM173A LINC00254 CAPN15 RAB40C TMEM204 TELO2 CLCN7 MIR3176 LOC105371038 RPUSD1 HBA2 C16orf59 TPSD1 TMEM8A NOXO1 HAGH MIR3677 E4F1 MIR4717 LINC00235 FBXL16 KCTD5 NUBP2 MRPL28 AXIN1 PRSS27 SLC9A3R2 NME3 RNF151 HN1L LMF1 NHLRC4 MRPS34 NDUFB10 TBL3 RAB11FIP3 TPSB2 CASKIN1 POLR3K EME2 RHBDF1 IFT140 SSTR5 SSTR5-AS1 WDR24 SNORA10 BRICD5 DECR2 WFIKKN1 ABCA3 MIR5587 HS3ST6 SOX8 MIR6511B1 SNORA64 RAB26 LOC101929280 MIR3177 RPS2 ATP6V0C LOC106660606 TPSG1 LOC105371047 PRR35 CEMP1 FLJ42627 LOC105371045 NME4 HAGHL HBA1 LOC100134368
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss MIR662 WDR90 PRR25 FAM173A CAPN15 RAB40C WDR24 WFIKKN1 MIR5587 MIR3176 CCDC78 LOC105371038 RPUSD1 LOC100287175 RHBDL1 LOC101929280 LINC00235 FBXL16 MCRIP2 PRR35 MSLN LOC107987233 NHLRC4 GNG13 LOC105371184 NARFL RAB11FIP3 PIGQ METTL26 CHTF18 JMJD8 METRN RHOT2 HAGHL STUB1
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss MIR662 WDR90 PRR25 FAM173A CAPN15 RAB40C WDR24 WFIKKN1 MIR5587 MIR3176 CCDC78 LOC105371038 RPUSD1 LOC100287175 RHBDL1 LOC101929280 LINC00235 FBXL16 MCRIP2 PRR35 MSLN LOC107987233 NHLRC4 GNG13 LOC105371184 NARFL RAB11FIP3 PIGQ METTL26 CHTF18 JMJD8 METRN RHOT2 HAGHL STUB1
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion MIR662 LMF1-AS1 WDR90 PRR25 FAM173A SSTR5 CAPN15 SSTR5-AS1 RAB40C WDR24 WFIKKN1 MIR5587 MIR3176 CCDC78 SOX8 LOC105371038 RPUSD1 LOC100287175 RHBDL1 LOC101929280 LOC107984876 LINC00235 FBXL16 MCRIP2 PRR35 MSLN LMF1 LOC107987233 NHLRC4 GNG13 LOC105371184 NARFL RAB11FIP3 PIGQ METTL26 C1QTNF8 CHTF18 JMJD8 METRN RHOT2 HAGHL STUB1
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss WFIKKN1 MCRIP2 PIGQ METTL26 LOC105371038 LOC100287175 PRR35 LOC107987233 WDR90 NHLRC4 LOC101929280 RAB40C
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain PIGQ PRR35 LOC107987233 NHLRC4 LOC101929280 CAPN15 RAB40C
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss FBXL16 MCRIP2 WDR90 FAM173A RAB40C LOC105371184 WDR24 NARFL WFIKKN1 CCDC78 PIGQ METTL26 LOC105371038 LOC100287175 JMJD8 RHBDL1 METRN RHOT2 HAGHL STUB1 LOC101929280
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication MIR662 WDR90 FAM173A RAB40C WDR24 WFIKKN1 CCDC78 LOC105371038 RPUSD1 LOC100287175 RHBDL1 LOC101929280 FBXL16 MCRIP2 MSLN GNG13 LOC105371184 NARFL PIGQ METTL26 CHTF18 JMJD8 METRN RHOT2 HAGHL STUB1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication MIR662 WDR90 PRR25 FAM173A CAPN15 RAB40C WDR24 WFIKKN1 MIR5587 MIR3176 CCDC78 LOC105371038 RPUSD1 LOC100287175 RHBDL1 LOC101929280 LINC00235 FBXL16 MCRIP2 PRR35 MSLN LOC107987233 NHLRC4 GNG13 LOC105371184 NARFL RAB11FIP3 PIGQ METTL26 CHTF18 JMJD8 METRN RHOT2 HAGHL STUB1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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