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See other MSLN CNV Assays ›
Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:765325 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03933622_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 10 - Intron 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 NP_001170826.1
NM_005823.5 NP_005814.2
NM_013404.4 NP_037536.2
XM_005255034.4 XP_005255091.1
XM_011522348.2 XP_011520650.1
XM_017022853.1 XP_016878342.1
XM_017022854.1 XP_016878343.1
XM_017022855.1 XP_016878344.1
XM_017022856.1 XP_016878345.1
XM_017022857.1 XP_016878346.1
XM_017022858.1 XP_016878347.1
AY743922.1 AAV87530.1
BC003512.1 AAH03512.1
BC009272.2 AAH09272.1
D49441.1 BAA08419.1
U40434.1 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571025 Chr.16:760143 - 768092 on Build GRCh38 Gain MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain MIR662 PRR25 RPUSD1 MSLN CHTF18 GNG13
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LINC00254 BAIAP3 TMEM8A FAHD1 ATP6V0C WASIR2 RNF151 MIR3677 MIR3178 PTX4 NPW GNG13 LOC105371184 JMJD8 LOC105371045 LMF1 C16orf91 GNPTG SNORD60 TPSG1 MIR3180-5 FBXL16 RAB40C RPL3L ERVK13-1 TBC1D24 MRPL28 NME4 MRPS34 MIR6511B1 LOC105371047 HBA2 PRR25 MIR4717 PGP CASKIN1 SOX8 PRSS29P LOC105371046 LOC105371038 HAGHL C1QTNF8 HN1L MEIOB RHBDL1 LOC106660606 SNHG19 NTN3 NME3 RPUSD1 EME2 TMEM204 IGFALS RNPS1 NOXO1 MIR6768 MIR3177 LOC100287175 ZNF598 NPRL3 LOC729652 WFIKKN1 MPG NDUFB10 POLR3K METTL26 NHLRC4 PDPK1 RAB26 UBE2I MIR5587 NUBP2 DDX11L10 METRN DECR2 CCDC154 SSTR5 CHTF18 RPS2 HAGH MIR6767 MIR4516 MIR1225 SNORA78 MSLN RGS11 BRICD5 UNKL SSTR5-AS1 HBA1 HBZ RHOT2 IFT140 E4F1 ECI1 LOC107984876 RHBDF1 CRAMP1 SNORA64 MSRB1 TPSB2 TELO2 LOC652276 FAM234A TPSD1 LUC7L HBQ1 HBM SNORA10 RAB11FIP3 TBL3 SYNGR3 ABCA3 TPSAB1 LMF1-AS1 SNRNP25 MIR662 LOC101929280 KCTD5 MAPK8IP3 LOC100134368 TSR3 WDR24 FAM173A NARFL ARHGDIG PIGQ LOC105371049 DNASE1L2 WDR90 CCNF GFER PRSS27 CACNA1H STUB1 LOC107987233 MIR940 TRAF7 CCDC78 C16orf59 PDIA2 SNHG9 PKD1 MIR6859-4 LINC00235 SPSB3 RPL23AP5 SLC9A3R2 PRR35 AMDHD2 HS3ST6 AXIN1 MIR3176 CEMP1 TSC2 CAPN15 FLJ42627 MCRIP2 MLST8 CLCN7 ABCA17P NTHL1
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MIR662 MSLN
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss HAGHL PIGQ RHBDL1 WDR90 RPUSD1 RHOT2 GNG13 LOC105371184 STUB1 LOC107987233 JMJD8 LOC100287175 WFIKKN1 CCDC78 METTL26 NHLRC4 MIR5587 LINC00235 FBXL16 RAB40C RAB11FIP3 METRN PRR35 CHTF18 MIR662 MIR3176 PRR25 LOC101929280 CAPN15 MCRIP2 MSLN WDR24 LOC105371038 FAM173A NARFL
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss HAGHL PIGQ RHBDL1 WDR90 RPUSD1 RHOT2 GNG13 LOC105371184 STUB1 LOC107987233 JMJD8 LOC100287175 WFIKKN1 CCDC78 METTL26 NHLRC4 MIR5587 LINC00235 FBXL16 RAB40C RAB11FIP3 METRN PRR35 CHTF18 MIR662 MIR3176 PRR25 LOC101929280 CAPN15 MCRIP2 MSLN WDR24 LOC105371038 FAM173A NARFL
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MIR662 MSLN
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion HAGHL C1QTNF8 PIGQ SSTR5-AS1 RHBDL1 WDR90 RPUSD1 RHOT2 GNG13 LOC107984876 LOC105371184 STUB1 LOC107987233 JMJD8 LOC100287175 LMF1 WFIKKN1 CCDC78 METTL26 NHLRC4 MIR5587 LINC00235 FBXL16 RAB40C RAB11FIP3 METRN PRR35 SSTR5 CHTF18 LMF1-AS1 MIR662 MIR3176 PRR25 LOC101929280 CAPN15 SOX8 MCRIP2 MSLN WDR24 LOC105371038 FAM173A NARFL
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication HAGHL PIGQ RHBDL1 WDR90 RPUSD1 RHOT2 GNG13 LOC105371184 STUB1 JMJD8 LOC100287175 WFIKKN1 CCDC78 METTL26 FBXL16 RAB40C METRN CHTF18 MIR662 LOC101929280 MCRIP2 MSLN WDR24 LOC105371038 FAM173A NARFL
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication HAGHL PIGQ RHBDL1 WDR90 RPUSD1 RHOT2 GNG13 LOC105371184 STUB1 LOC107987233 JMJD8 LOC100287175 WFIKKN1 CCDC78 METTL26 NHLRC4 MIR5587 LINC00235 FBXL16 RAB40C RAB11FIP3 METRN PRR35 CHTF18 MIR662 MIR3176 PRR25 LOC101929280 CAPN15 MCRIP2 MSLN WDR24 LOC105371038 FAM173A NARFL
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss HAGHL FBXL16 RHBDL1 WDR90 METRN RPUSD1 RHOT2 CHTF18 GNG13 LOC105371184 STUB1 MIR662 JMJD8 LOC100287175 CCDC78 MCRIP2 MSLN WDR24 LOC105371038 FAM173A NARFL
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss MIR662 PRR25 RPUSD1 MSLN CHTF18 GNG13
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MIR662 MSLN

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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