Hs03934459_cn

• Gene Symbol: CCNF
• Assay Reference Genome Location: Chr.16:2428834 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 899
• Gene Name: cyclin F
• Gene Aliases: FBX1, FBXO1
• Location: Chr.16:2425438-2458858 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CCNF	XM_017023822.1			XP_016879311.1
	XM_017023823.1			XP_016879312.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	GFER SNORA10 SNHG19 FBXL16 PKD1 CCDC154 C16orf59 LOC105371049 CRAMP1 SLC9A3R2 LOC101929280 RAB40C C16orf91 RAB11FIP3 KCTD5 MIR3178 MIR3177 IFT140 WASIR2 EME2 PRSS27 MIR6859-4 MIR940 LOC729652 SYNGR3 TMEM8A RNPS1 SPSB3 STUB1 SNRNP25 HBZ ERVK13-1 RGS11 NTN3 C1QTNF8 MLST8 NHLRC4 LOC107984876 MRPL28 FLJ42627 HBA2 UBE2I LOC107987233 CCNF MSRB1 SSTR5-AS1 FAM234A RPL23AP5 HBQ1 MRPS34 SNHG9 TMEM204 CLCN7 PDPK1 ATP6V0C PDIA2 LOC105371184 ABCA17P NME4 MIR6511B1 TBL3 NUBP2 PRR25 CACNA1H BAIAP3 ECI1 RPS2 GNPTG MEIOB LOC105371045 LOC100134368 MIR4516 TELO2 NTHL1 MPG MIR1225 SNORA78 WDR90 LUC7L WFIKKN1 LINC00254 NME3 MIR4717 LOC105371047 HN1L AXIN1 TPSAB1 HBA1 MAPK8IP3 RNF151 RHBDF1 SNORA64 MIR3677 CEMP1 SOX8 LOC106660606 FAHD1 CAPN15 TRAF7 LMF1 PTX4 SSTR5 RHOT2 WDR24 MIR3176 RPUSD1 JMJD8 DDX11L10 NDUFB10 LOC100287175 CCDC78 BRICD5 MIR3180-5 CASKIN1 POLR3K TPSB2 RAB26 TBC1D24 FAM173A HBM METRN GNG13 LOC105371046 PRR35 NARFL METTL26 HS3ST6 MIR5587 DNASE1L2 RHBDL1 LOC652276 UNKL TPSG1 PRSS29P LOC105371038 NPRL3 ABCA3 ZNF598 HAGHL NOXO1 RPL3L ARHGDIG NPW PGP MCRIP2 CHTF18 IGFALS MIR6768 MIR6767 MIR662 SNORD60 E4F1 LMF1-AS1 HAGH MSLN PIGQ LINC00235 TSR3 TPSD1 TSC2 AMDHD2 DECR2
nsv952903	Chr.16:2423400 - 2476599 on Build GRCh38	Deletion	ABCA17P C16orf59 TBC1D24 MIR6768 MIR6767 CCNF LOC729652 NTN3
nsv1052260	Chr.16:2074546 - 2629655 on Build GRCh38	Gain	MIR3677 CEMP1 LOC106660606 SNHG19 TRAF7 PKD1 C16orf59 LOC105371049 DNASE1L2 LOC652276 PDPK1 ATP6V0C MIR3178 ABCA17P MIR6511B1 ABCA3 ECI1 MIR940 LOC729652 RNPS1 PGP MIR4516 MIR1225 MIR6768 MIR6767 BRICD5 SNORD60 NTN3 E4F1 MIR4717 MLST8 MIR3180-5 CASKIN1 RAB26 TBC1D24 TSC2 CCNF AMDHD2
nsv833121	Chr.16:2360975 - 2518228 on Build GRCh38	Loss	ABCA17P C16orf59 TBC1D24 MIR6768 MIR6767 CCNF LOC729652 NTN3 ATP6V0C

More Information

Additional Information:

For this assay, SNP(s) [rs78443348] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

kinase activator

Gene Ontology Categories:

Process(es)

re-entry into mitotic cell cycle
placenta development
mitotic nuclear division
negative regulation of centrosome duplication
protein ubiquitination
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cell division

Function(s)

protein binding