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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:596268 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03934807_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss CAPN15 RAB11FIP3 LOC107987233 LINC00235 MIR3176 RAB40C PIGQ LOC101929280 NHLRC4 PRR35 MIR5587
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication PDIA2 RPL3L RPUSD1 MIR3178 LOC729652 TSC2 PGP LUC7L MSLN EME2 C16orf59 RHOT2 PIGQ RAB26 LOC100287175 NHLRC4 KCTD5 MIR4516 CHTF18 NPRL3 CLCN7 NOXO1 PKD1 UNKL ECI1 ARHGDIG HBQ1 MIR6768 TBC1D24 CASKIN1 ATP6V0C ERVK13-1 UBE2I LOC105371049 LINC00235 LOC105371047 PRR35 LOC105371184 SSTR5-AS1 PRR25 MIR662 GNG13 CRAMP1 MIR5587 MIR4717 NARFL MSRB1 RGS11 MIR3177 MIR1225 ZNF598 RPL23AP5 BRICD5 MAPK8IP3 LOC652276 SNRNP25 RAB11FIP3 E4F1 C1QTNF8 FLJ42627 HBZ MIR6767 SYNGR3 MPG TSR3 DNASE1L2 MRPS34 TPSG1 GNPTG NUBP2 HBA2 RAB40C CCNF RNPS1 RPS2 TPSD1 CAPN15 CCDC78 HS3ST6 LINC00254 NPW TMEM8A NDUFB10 HN1L NTHL1 TELO2 WDR90 WASIR2 MIR3677 IGFALS FBXL16 AMDHD2 IFT140 SSTR5 HBM DDX11L10 LOC107987233 ABCA3 MIR3176 FAM173A LOC105371038 LOC101929280 CEMP1 FAHD1 SNORA10 PRSS27 MIR6859-4 POLR3K TPSB2 JMJD8 PRSS29P CACNA1H SPSB3 HBA1 GFER RNF151 LMF1-AS1 SNHG19 SNORD60 MRPL28 LOC105371045 NME4 WFIKKN1 TMEM204 NTN3 FAM234A CCDC154 SNORA64 LOC106660606 MLST8 RHBDF1 ABCA17P TBL3 NME3 SNORA78 PDPK1 HAGH TRAF7 SOX8 PTX4 MIR3180-5 MIR940 MCRIP2 HAGHL SLC9A3R2 BAIAP3 LOC107984876 LOC100134368 METTL26 LOC105371046 MIR6511B1 WDR24 SNHG9 TPSAB1 AXIN1 METRN C16orf91 LMF1 RHBDL1 DECR2 STUB1 MEIOB
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss RPUSD1 CAPN15 CCDC78 WFIKKN1 MSLN NARFL RHOT2 PIGQ LOC100287175 NHLRC4 CHTF18 WDR90 FBXL16 RAB11FIP3 LOC107987233 LINC00235 MIR3176 FAM173A LOC105371038 LOC101929280 MCRIP2 PRR35 HAGHL LOC105371184 METTL26 WDR24 JMJD8 PRR25 RAB40C METRN MIR662 GNG13 RHBDL1 MIR5587 STUB1
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss RPUSD1 CAPN15 CCDC78 WFIKKN1 MSLN NARFL RHOT2 PIGQ LOC100287175 NHLRC4 CHTF18 WDR90 FBXL16 RAB11FIP3 LOC107987233 LINC00235 MIR3176 FAM173A LOC105371038 LOC101929280 MCRIP2 PRR35 HAGHL LOC105371184 METTL26 WDR24 JMJD8 PRR25 RAB40C METRN MIR662 GNG13 RHBDL1 MIR5587 STUB1
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion RPUSD1 CAPN15 CCDC78 WFIKKN1 MSLN NARFL RHOT2 PIGQ LOC100287175 NHLRC4 CHTF18 WDR90 FBXL16 SSTR5 RAB11FIP3 LOC107987233 C1QTNF8 SOX8 LINC00235 MIR3176 FAM173A LOC105371038 LOC101929280 MCRIP2 PRR35 HAGHL LOC105371184 LOC107984876 METTL26 SSTR5-AS1 WDR24 JMJD8 PRR25 RAB40C METRN MIR662 LMF1 GNG13 RHBDL1 LMF1-AS1 MIR5587 STUB1
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss METTL26 WFIKKN1 LOC107987233 WDR90 RAB40C PIGQ LOC105371038 LOC101929280 LOC100287175 MCRIP2 NHLRC4 PRR35
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain CAPN15 LOC107987233 RAB40C PIGQ LOC101929280 NHLRC4 PRR35
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss CCDC78 WFIKKN1 NARFL RHOT2 FAM173A PIGQ LOC105371038 LOC101929280 LOC100287175 MCRIP2 HAGHL LOC105371184 METTL26 WDR24 JMJD8 WDR90 RAB40C METRN RHBDL1 FBXL16 STUB1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication RPUSD1 CCDC78 WFIKKN1 MSLN NARFL RHOT2 PIGQ LOC100287175 CHTF18 WDR90 FBXL16 FAM173A LOC105371038 LOC101929280 MCRIP2 HAGHL LOC105371184 METTL26 WDR24 JMJD8 RAB40C METRN MIR662 GNG13 RHBDL1 STUB1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication RPUSD1 CAPN15 CCDC78 WFIKKN1 MSLN NARFL RHOT2 PIGQ LOC100287175 NHLRC4 CHTF18 WDR90 FBXL16 RAB11FIP3 LOC107987233 LINC00235 MIR3176 FAM173A LOC105371038 LOC101929280 MCRIP2 PRR35 HAGHL LOC105371184 METTL26 WDR24 JMJD8 PRR25 RAB40C METRN MIR662 GNG13 RHBDL1 MIR5587 STUB1

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More Information


Additional Information:

For this assay, SNP(s) [rs75238938] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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